Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G41990 428 / 1e-144 EIP1, ATWNK8, WNK8 EMF1-Interacting Protein 1, with no lysine (K) kinase 8 (.1) AT1G64630 427 / 1e-144 ATWNK10 WITH NO LYSINE KINASE 10, with no lysine (K) kinase 10 (.1) AT3G18750 422 / 4e-142 ZIK5, WNK6, ATWNK6 ARABIDOPSIS THALIANA WITH NO K 6, with no lysine (K) kinase 6 (.1), with no lysine (K) kinase 6 (.2), with no lysine (K) kinase 6 (.3) AT1G49160 410 / 8e-138 WNK7 Protein kinase superfamily protein (.1.2) AT3G48260 362 / 1e-119 WNK3 with no lysine (K) kinase 3 (.1) AT5G28080 357 / 6e-118 WNK9 Protein kinase superfamily protein (.1.2) AT3G22420 351 / 1e-114 ZIK3, WNK2, ATWNK2 ARABIDOPSIS THALIANA WITH NO K 2, with no lysine (K) kinase 2 (.1), with no lysine (K) kinase 2 (.2) AT3G04910 353 / 5e-114 ATWNK1, ZIK4, WNK1 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) AT3G51630 333 / 8e-108 ATWNK5, ZIK1, WNK5 with no lysine (K) kinase 5 (.1), with no lysine (K) kinase 5 (.2) AT5G58350 324 / 4e-104 ZIK2, WNK4 with no lysine (K) kinase 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G085500 [exp] 605 / 0 AT5G41990 606 / 0.0 EMF1-Interacting Protein 1, with no lysine (K) kinase 8 (.1) Potri.003G145300 [exp] 593 / 0 AT5G41990 609 / 0.0 EMF1-Interacting Protein 1, with no lysine (K) kinase 8 (.1) Potri.010G225000 [exp] 517 / 0 AT3G18750 389 / 9e-133 ARABIDOPSIS THALIANA WITH NO K 6, with no lysine (K) kinase 6 (.1), with no lysine (K) kinase 6 (.2), with no lysine (K) kinase 6 (.3) Potri.014G101500 [exp] 437 / 2e-146 AT3G18750 564 / 0.0 ARABIDOPSIS THALIANA WITH NO K 6, with no lysine (K) kinase 6 (.1), with no lysine (K) kinase 6 (.2), with no lysine (K) kinase 6 (.3) Potri.005G057300 [exp] 421 / 2e-140 AT1G49160 712 / 0.0 Protein kinase superfamily protein (.1.2) Potri.012G086700 [exp] 372 / 1e-122 AT3G48260 622 / 0.0 with no lysine (K) kinase 3 (.1) Potri.005G049800 [exp] 369 / 1e-119 AT3G04910 786 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) Potri.015G084600 [exp] 362 / 8e-119 AT3G48260 622 / 0.0 with no lysine (K) kinase 3 (.1) Potri.010G087900 [exp] 365 / 4e-118 AT3G04910 713 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003215 [exp] 510 / 2e-173 AT5G41990 585 / 0.0 EMF1-Interacting Protein 1, with no lysine (K) kinase 8 (.1) Lus10033225 [exp] 503 / 2e-173 AT5G41990 620 / 0.0 EMF1-Interacting Protein 1, with no lysine (K) kinase 8 (.1) Lus10017318 [exp] 498 / 8e-172 AT5G41990 589 / 0.0 EMF1-Interacting Protein 1, with no lysine (K) kinase 8 (.1) Lus10000334 [exp] 485 / 5e-163 AT5G41990 597 / 0.0 EMF1-Interacting Protein 1, with no lysine (K) kinase 8 (.1) Lus10030229 [exp] 451 / 3e-151 AT3G18750 561 / 0.0 ARABIDOPSIS THALIANA WITH NO K 6, with no lysine (K) kinase 6 (.1), with no lysine (K) kinase 6 (.2), with no lysine (K) kinase 6 (.3) Lus10005983 [exp] 410 / 4e-135 AT3G18750 523 / 3e-178 ARABIDOPSIS THALIANA WITH NO K 6, with no lysine (K) kinase 6 (.1), with no lysine (K) kinase 6 (.2), with no lysine (K) kinase 6 (.3) Lus10041947 [exp] 364 / 3e-119 AT3G48260 612 / 0.0 with no lysine (K) kinase 3 (.1) Lus10020236 [exp] 359 / 5e-116 AT3G04910 786 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) Lus10001789 [exp] 358 / 1e-115 AT3G04910 790 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) Lus10010547 [exp] 357 / 1e-115 AT3G04910 620 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.008G037200.2 pacid=42807666 polypeptide=Potri.008G037200.2.p locus=Potri.008G037200 ID=Potri.008G037200.2.v4.1 annot-version=v4.1 ATGGATTTAGATAATGATGGGTTCGTGGAGAAAGATCCAACAGGTCGGTACGTCAGGTATGACGAAATCTTGGGAGGAGGAACAGTCAAGACTGTATATA GGGCTTTTGATGAAGTTGATGGAGTTGAAGTAGCGTGGAAACAAGCAAACGTCGAAGATGTATCGCAAAAACAACTAGAAAGATGGACTTCTGAGGCTCG CTTATTGAAGTCGTTGAAAAATAAGAACATAATCAAGTTTTATGATTTTTGGATCGATGATGAGAAGAAAACTCTTAACATGATAACTGAGATATTCGTT TCTGGGAGTTTGAGCCAGTATTGCAAGAAACACAAGGATGTTGATACGAAGGCTATTAAGAACTGGGCAAGGCAGATTCTCCGAGGTTTGCACTATTTAC ATAATCATGAACCTCCTATCATTCTTGGCAATTTGAAATGTGATAGCATATTTGTTAATGGAAACAATGGAGAGGTTAAGATTGGAGATCTTGGATTAGC CATTGTTACGCAACAGCCTACTGGTTCAAGTGATTTAGGTACTCCAGCGTATATGGCTCCTGAGCTTTGTGAAGATGAATACAATGAGCTTGTCGATGTT TATTCTTTCGGCATGTGCATGTTAGAGATGGTTACTTGTGAATATCCATACTGTGAAATAAAAAATCCAGGGCAGGTATACAAGAAGGTTATCTCAGGCG TGAAGCCGGCTTCCCTCAACAAGGTGAATGATCCCCAAGTTAAACAATTCATAGAGAAGTGCCTAGTTCCAGCCTCTTTGAGATTGCCGGCGATAGAGCT TTTGAAAGATCCATTCCTAGCAACTGAAAATTCAAAAGATACTGTTTCTGGTTCTATGAAGTTACCAAATAATCTTATGCCCAAACAAGTGATCAACTTG CCACATTCAGAATCCCGTTCGATGGACATTGACGACAAGAAGCTTCTGGTAGGATCTTGTAAAGAAAGTATCGATGAGAAGCTCCAGTTTTCAACTCTAG AAATTTGTAAGTTCACCGAGAAAAATGAATTCAGATTAAGAGGGGAGAAAATCGACAGCAATACGATTTCATTGAATTTGAACATTACGGAAACTTCATG TAGTCTTGAAAGGAAAGTGGAGTTTCCTTTTCATCTTGACTCAGATACTGCAGTTTCGGTAGCTGAGGAGATGGTTGAACAACTTGGATTGTCACCTGAA GATGCAGCTTATAATGCTGAGTTGATTGATATCTTGGTAATGAAGCTGGTTCCTAGCTGGAAAACTTCACGTGGAAGCATCGCGAATGCACCTGAGAGGC ATCCTGATTGCTCACAATCTGTCAGAGATCAAGAGGCTCTACAATCAATTAATTTAGAAATTTCTGCCGAACATGATGTGACAATTTCCTTTCGTGCCAG CACTAACAAGCCTTTGGGATCTTCCCATTGCAGTCTTCAATTGAATACTCACAATTTGGGCTCAGATTTTAGGACACATGATGATGGACGTCTACCAGAA CACAAAAAATCTGCAAGAAGATTTCTGGGCTTCTGTATTGGTTCATGCTTTGGTATGAAAAATATGAGAGCTGGTCCTCCATCTGCTACCCATACCAAGC AGAGGAAATTGACGAGCGAAAGATAG
AA sequence Show only first row Show all	>Potri.008G037200.2 pacid=42807666 polypeptide=Potri.008G037200.2.p locus=Potri.008G037200 ID=Potri.008G037200.2.v4.1 annot-version=v4.1 MDLDNDGFVEKDPTGRYVRYDEILGGGTVKTVYRAFDEVDGVEVAWKQANVEDVSQKQLERWTSEARLLKSLKNKNIIKFYDFWIDDEKKTLNMITEIFV SGSLSQYCKKHKDVDTKAIKNWARQILRGLHYLHNHEPPIILGNLKCDSIFVNGNNGEVKIGDLGLAIVTQQPTGSSDLGTPAYMAPELCEDEYNELVDV YSFGMCMLEMVTCEYPYCEIKNPGQVYKKVISGVKPASLNKVNDPQVKQFIEKCLVPASLRLPAIELLKDPFLATENSKDTVSGSMKLPNNLMPKQVINL PHSESRSMDIDDKKLLVGSCKESIDEKLQFSTLEICKFTEKNEFRLRGEKIDSNTISLNLNITETSCSLERKVEFPFHLDSDTAVSVAEEMVEQLGLSPE DAAYNAELIDILVMKLVPSWKTSRGSIANAPERHPDCSQSVRDQEALQSINLEISAEHDVTISFRASTNKPLGSSHCSLQLNTHNLGSDFRTHDDGRLPE HKKSARRFLGFCIGSCFGMKNMRAGPPSATHTKQRKLTSER

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G41990		EIP1, ATWNK8, W...	EMF1-Interacting Protein 1, wi...		Potri.008G037200 [exp]	0	1
AT1G69680			Mog1/PsbP/DUF1795-like photosy...		Potri.013G049900 [exp]	1.41	0.9624
					Potri.013G018050 [exp]	8.24	0.9647
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Potri.018G008100 [exp]	8.48	0.9407
AT2G16730		BGAL13	beta-galactosidase 13, glycosy...		Potri.004G174800 [exp]	11.74	0.8947	BGAL11.1
AT5G59720		HSP18.2 HSP18.1...	heat shock protein 18.2 (.1)		Potri.010G195700 [exp]	17.86	0.9527	Pt-HSP18.4
AT1G77680			Ribonuclease II/R family prote...		Potri.002G086400 [exp]	20.29	0.8446
AT3G12580		ATHSP70, HSP70	ARABIDOPSIS HEAT SHOCK PROTEIN...		Potri.001G042700 [exp]	20.61	0.9606	Pt-HSP70.10
AT3G04120		GAPC1, GAPC-1, ...	glyceraldehyde-3-phosphate deh...		Potri.001G335800 [exp]	22.60	0.9552	GAPDH.2
AT2G46240		ATBAG6, BAG6	ARABIDOPSIS THALIANA BCL-2-ASS...		Potri.002G166300 [exp]	26.83	0.9494
AT1G74310		HOT1, ATHSP101	heat shock protein 101 (.1)		Potri.015G056900 [exp]	27.16	0.9549	Pt-ATHSP101.1

Compare expression of checked genes

Potri.008G037200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.