Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57120 371 / 1e-125 Protein kinase superfamily protein (.1) AT1G51940 147 / 9e-39 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) AT5G48740 130 / 2e-32 Leucine-rich repeat protein kinase family protein (.1) AT4G29990 127 / 2e-31 Leucine-rich repeat transmembrane protein kinase protein (.1) AT2G19190 123 / 4e-30 FRK1 FLG22-induced receptor-like kinase 1 (.1) AT3G24550 122 / 4e-30 ATPERK1 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) AT3G21630 122 / 5e-30 LYSMRLK1, CERK1 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) AT4G11900 120 / 5e-29 S-locus lectin protein kinase family protein (.1) AT2G19230 119 / 9e-29 Leucine-rich repeat transmembrane protein kinase protein (.1) AT4G01330 117 / 1e-28 Protein kinase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G037501 [exp] 569 / 0 AT3G57120 411 / 3e-141 Protein kinase superfamily protein (.1) Potri.010G224900 [exp] 555 / 0 AT3G57120 414 / 2e-142 Protein kinase superfamily protein (.1) Potri.009G009600 [exp] 367 / 4e-124 AT3G57120 444 / 6e-154 Protein kinase superfamily protein (.1) Potri.001G190200 [exp] 156 / 7e-42 AT1G51940 824 / 0.0 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.T125208 [exp] 140 / 2e-36 AT1G51940 336 / 9e-107 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.015G081601 [exp] 140 / 3e-36 AT1G51940 337 / 5e-107 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.006G252600 [exp] 134 / 3e-34 AT1G51940 326 / 4e-103 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.014G156400 [exp] 132 / 2e-33 AT3G21630 678 / 0.0 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) Potri.008G187500 [exp] 131 / 3e-33 AT1G51940 362 / 7e-117 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038716 [exp] 441 / 1e-152 AT3G57120 407 / 1e-138 Protein kinase superfamily protein (.1) Lus10016113 [exp] 353 / 3e-117 AT3G57120 447 / 8e-154 Protein kinase superfamily protein (.1) Lus10021451 [exp] 191 / 2e-58 AT3G57120 259 / 4e-85 Protein kinase superfamily protein (.1) Lus10027054 [exp] 182 / 4e-53 AT3G57120 213 / 2e-64 Protein kinase superfamily protein (.1) Lus10011517 [exp] 166 / 9e-47 AT3G57120 182 / 2e-52 Protein kinase superfamily protein (.1) Lus10011518 [exp] 161 / 7e-45 AT3G57120 173 / 6e-49 Protein kinase superfamily protein (.1) Lus10006841 [exp] 155 / 3e-41 AT1G51940 812 / 0.0 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10037586 [exp] 155 / 4e-41 AT1G51940 807 / 0.0 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10035301 [exp] 137 / 5e-35 AT3G21630 578 / 0.0 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) Lus10004625 [exp] 136 / 1e-34 AT1G51940 347 / 7e-111 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.008G037401.1 pacid=42807776 polypeptide=Potri.008G037401.1.p locus=Potri.008G037401 ID=Potri.008G037401.1.v4.1 annot-version=v4.1 ATGAACATAATCAACTCTCTTTACCCAAAATCCAAGACATCGAAGTCCTTAAAATCGTCACCGTCACCATCACCATCACCATCACCATCACCATCAGCAA CATCATCATCACCTGCTTCCTCTTTGATCAACCCATCATCTAACAACTACCCATCAACAAATGACTCTCCAACCTGTTCAGAAGCATCAAAGTCCCTGTC TTTCTCAAGCAAAACATCTCTTTCCAGCCTCAAAGACTCATTACCAGAAAACCCTCACATTTATGACTTCTCTGAAATCTGTAAAACTACCAACAACTTT TTAAAGAAACCCTTTTCTTCTTCCTCTTCATCAACCTCTTGGAGATGCTCAATTCGTGGAAAAGAAGTGATTATTTTTCAACGCAAGTTTCGCCGTCAGA TTGGATTACCTGAGCTTCGAAAGAAGTTACTGACTATTTGCAGGAGTCATCACAGTAGCGTGATCAAGCTTCTTGGTGTTTCCTCTCCAGGGAACTCTAT CTATCTTGTTTATGAGTATGTTCATGGTGCAAATTTAGCTACTTGTCTTAGGAATCCACAGAACCCCAGTTACACAGTTTTATCATCGTGGTTATCTCGT ATGCAGATTGCTACTGATATAGCTAATGGTCTTGATTATATTCTCCACTGTTCAGGTTTGAATTCAGAATTTGTGCATGGTCGTATAAAAAGTTCAAGCA TTTTAGTTACTGAAGATTCTTTGAATGCCAAGATTTGTCATTTTGGGACTGCTGAATTGTGTGGAGAGATGGTGGGGAATGAAAGTTCTTTGTCGAAAAA TTTTGGTAGGTCAGATAGTAGGGAAATGAAATTTGAAGGAACGACAGGATATATGGCGCCGGAGTTTCAGGCAAGTGGATTTGTGACTCAGAAATGTGAT GTGTATGCATTCGGGGTGGTGATTTTGGAGTTGGTGTCTGGGGAGGAGGCGTTGCGATATGTGTTTGATAAGGGGGGTGGAGTTTATGAGAGAATTAGTG TGATTGAGATGGCAAGGGAGGTGGTGGCTGCTGGTGAGGGTGAGTTAAGGAAGTGGGTTGACAAGAGGTTGAAGGATTCGTATCCGGTTGAAGTAGCAGA GAAGATGGTGCTGTTGGGATTGGAGTGTGTGGATGATGATCCTGAGAAGCGGCCCCATACGGGGCTAATTGATGTTAGAGTCTCTAAATTGTACTTGAAG TCAAAGAAATGGGCTAAAAAGTTTGGTTTGCCCACTGATTTCTCGGTCTCTTTGGCGCCACGATGA
AA sequence Show only first row Show all	>Potri.008G037401.1 pacid=42807776 polypeptide=Potri.008G037401.1.p locus=Potri.008G037401 ID=Potri.008G037401.1.v4.1 annot-version=v4.1 MNIINSLYPKSKTSKSLKSSPSPSPSPSPSPSATSSSPASSLINPSSNNYPSTNDSPTCSEASKSLSFSSKTSLSSLKDSLPENPHIYDFSEICKTTNNF LKKPFSSSSSSTSWRCSIRGKEVIIFQRKFRRQIGLPELRKKLLTICRSHHSSVIKLLGVSSPGNSIYLVYEYVHGANLATCLRNPQNPSYTVLSSWLSR MQIATDIANGLDYILHCSGLNSEFVHGRIKSSSILVTEDSLNAKICHFGTAELCGEMVGNESSLSKNFGRSDSREMKFEGTTGYMAPEFQASGFVTQKCD VYAFGVVILELVSGEEALRYVFDKGGGVYERISVIEMAREVVAAGEGELRKWVDKRLKDSYPVEVAEKMVLLGLECVDDDPEKRPHTGLIDVRVSKLYLK SKKWAKKFGLPTDFSVSLAPR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G57120			Protein kinase superfamily pro...		Potri.008G037401 [exp]	0	1
AT2G27480			Calcium-binding EF-hand family...		Potri.009G163600 [exp]	2.82	0.8587
AT5G60800			Heavy metal transport/detoxifi...		Potri.009G007600 [exp]	3.87	0.8334
AT5G63930			Leucine-rich repeat protein ki...		Potri.019G025500 [exp]	4.89	0.8423
AT2G46800		ATMTP1, ZAT1, Z...	ZINC TRANSPORTER OF ARABIDOPSI...		Potri.002G180100 [exp]	5.74	0.8457	PtrMTP2,Pt-MTP1.2
AT2G27480			Calcium-binding EF-hand family...		Potri.004G202200 [exp]	6.48	0.8311
AT4G30900			DNAse I-like superfamily prote...		Potri.018G106700 [exp]	7.74	0.7880
AT5G66730	C2H2ZnF	IDD1, ENY	INDETERMINATE DOMAIN 1, ENHYDR...		Potri.007G028800 [exp]	8.48	0.8323
AT4G27220			NB-ARC domain-containing disea...		Potri.019G014312 [exp]	10.48	0.8227
AT5G18860		NSH3	nucleoside hydrolase 3, inosin...		Potri.008G197400 [exp]	10.95	0.8117
AT1G70520		ASG6, CRK2	ALTERED SEED GERMINATION 6, cy...		Potri.001G276600 [exp]	12.00	0.8288

Compare expression of checked genes

Potri.008G037401 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.