Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57120 411 / 3e-141 Protein kinase superfamily protein (.1) AT1G51940 162 / 6e-44 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) AT3G21630 126 / 2e-31 LYSMRLK1, CERK1 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) AT4G01330 124 / 4e-31 Protein kinase superfamily protein (.1.2) AT4G02630 122 / 3e-30 Protein kinase superfamily protein (.1) AT2G33580 122 / 6e-30 Protein kinase superfamily protein (.1) AT1G09440 119 / 2e-29 Protein kinase superfamily protein (.1) AT1G56720 118 / 5e-29 Protein kinase superfamily protein (.1.2.3) AT4G29990 118 / 2e-28 Leucine-rich repeat transmembrane protein kinase protein (.1) AT2G42960 117 / 2e-28 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G224900 [exp] 632 / 0 AT3G57120 414 / 2e-142 Protein kinase superfamily protein (.1) Potri.008G037401 [exp] 602 / 0 AT3G57120 371 / 2e-125 Protein kinase superfamily protein (.1) Potri.009G009600 [exp] 426 / 2e-147 AT3G57120 444 / 6e-154 Protein kinase superfamily protein (.1) Potri.001G190200 [exp] 169 / 3e-46 AT1G51940 824 / 0.0 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.015G081601 [exp] 149 / 2e-39 AT1G51940 337 / 5e-107 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.T125208 [exp] 146 / 3e-38 AT1G51940 336 / 9e-107 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.008G187500 [exp] 140 / 3e-36 AT1G51940 362 / 7e-117 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.006G252600 [exp] 140 / 3e-36 AT1G51940 326 / 4e-103 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.014G156400 [exp] 135 / 3e-34 AT3G21630 678 / 0.0 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038716 [exp] 501 / 4e-176 AT3G57120 407 / 1e-138 Protein kinase superfamily protein (.1) Lus10016113 [exp] 399 / 3e-135 AT3G57120 447 / 8e-154 Protein kinase superfamily protein (.1) Lus10021451 [exp] 221 / 3e-70 AT3G57120 259 / 4e-85 Protein kinase superfamily protein (.1) Lus10027054 [exp] 193 / 3e-57 AT3G57120 213 / 2e-64 Protein kinase superfamily protein (.1) Lus10011517 [exp] 174 / 2e-49 AT3G57120 182 / 2e-52 Protein kinase superfamily protein (.1) Lus10011518 [exp] 172 / 6e-49 AT3G57120 173 / 6e-49 Protein kinase superfamily protein (.1) Lus10006841 [exp] 169 / 4e-46 AT1G51940 812 / 0.0 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10037586 [exp] 167 / 1e-45 AT1G51940 807 / 0.0 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10004625 [exp] 147 / 2e-38 AT1G51940 347 / 7e-111 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10026689 [exp] 145 / 1e-37 AT1G51940 348 / 4e-111 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.008G037501.1 pacid=42808590 polypeptide=Potri.008G037501.1.p locus=Potri.008G037501 ID=Potri.008G037501.1.v4.1 annot-version=v4.1 ATGTGCAAATCAAAAAAGAGCACCAACATCATCAACTCTACAACTACCTCAAGATCCATGGCTACCGAATCCTTAAAATCAACACCACCACCATCATCTT CATCCTCATCATCATCTACTATCAACCCACCATCATCTACTCACAAATACCCATCAACATCTACTAACAAATACCCATCAACAAATTACTCTCCAAACTA CCCATCAACATCAAAGTCTTGGTCCTTTTCAAGCAAAACATCTCTTTCTAACCTTAAAGATTCATTACCAGAAAACCCTCACATTTATGATTTCTCTGAA ATCAGCAAAGCTACAAACAACTTTTTACAAAAACCCTTTTCGTCTTCCTCTTCATCAGTCTCTTGGAGATGCTCACTTCGTGGAAAAGAATTGATTCTTT TTCAACGCAAGTTTCGCCGTCAGATTGAATCACCTGAGCTTCAACAGAGGTTATTGGCCATTTGCAGGAGTCATCACAGTAGCGTGATCAAGCTTCTTGG TGCTACCACTTCAGGGAATTATATCTATCTTGCTTATGAGTATGTTCATGGTGCAAATTTAGCTACCTGTCTTAGGAATCCACAGAACCCCAGTTACACA GTTTTATCATCTTGGTTATCTCGTATGCAGATTGCTACTGATATAGCTAATGGTCTTGATTATATTCACCACTGTTCAGGTTTGAATTCAGAATTTGTGC ATAATCATATAAAAAGTTTAAGTATTTCAGTTACTGAAGATTCTTTAAATGCCAAGATTTGTCATTTTGGGACTGCTGAATTGTGTGGAGAGATAGTGGG GAAGGAAGGGTCTTCCTCGAAAAATTTTGGGAGGTCGAATAGTAAGGTAATGAAAATTGAGGGAACAAGAGGCTATATGGCGCCTGAGTTTCAAGCAAGT GGACTTACGACACAGAAATGTGACGTGTATGCATTCGGGGTGGTGATTTTGGAGTTGGTGTCTGGGGAGGAGGCGTTGAGGTATGTGTTTGATGAGGGAG GTGGAGGTTATAAGAGAATTAGTGTTATTGAGAGGGCAAGGGAGGTGATGGCTGTTGGTGGGGGTGAATTGAGGAAGTGGGTTGATAAGAGGATGAAGGA TTCGTATCCAGTTGAAGTTGCAGAGAAGATGTTGTTGTTGGGATTGGAATGTGTGGATGATGATCCAGAGAAGCGGCCGGATATGGGGCTGGTTGATGGT AGAGTGTCTAGATTGTATTTGGAGTCAAAGAATTGGGCTGAAAAGATTGGTTTGCCTACTGATTTCTCAGTCTCATTGGCGCCTCGTTAA
AA sequence Show only first row Show all	>Potri.008G037501.1 pacid=42808590 polypeptide=Potri.008G037501.1.p locus=Potri.008G037501 ID=Potri.008G037501.1.v4.1 annot-version=v4.1 MCKSKKSTNIINSTTTSRSMATESLKSTPPPSSSSSSSSTINPPSSTHKYPSTSTNKYPSTNYSPNYPSTSKSWSFSSKTSLSNLKDSLPENPHIYDFSE ISKATNNFLQKPFSSSSSSVSWRCSLRGKELILFQRKFRRQIESPELQQRLLAICRSHHSSVIKLLGATTSGNYIYLAYEYVHGANLATCLRNPQNPSYT VLSSWLSRMQIATDIANGLDYIHHCSGLNSEFVHNHIKSLSISVTEDSLNAKICHFGTAELCGEIVGKEGSSSKNFGRSNSKVMKIEGTRGYMAPEFQAS GLTTQKCDVYAFGVVILELVSGEEALRYVFDEGGGGYKRISVIERAREVMAVGGGELRKWVDKRMKDSYPVEVAEKMLLLGLECVDDDPEKRPDMGLVDG RVSRLYLESKNWAEKIGLPTDFSVSLAPR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G57120			Protein kinase superfamily pro...		Potri.008G037501 [exp]	0	1
AT1G22220		AUF2	auxin up-regulated f-box prote...		Potri.005G166500 [exp]	2.82	0.8068
AT1G01500			Erythronate-4-phosphate dehydr...		Potri.014G089600 [exp]	3.74	0.8248
AT5G28040	GeBP		DNA-binding storekeeper protei...		Potri.001G261700 [exp]	6.48	0.7887
AT1G15130			Endosomal targeting BRO1-like ...		Potri.008G126900 [exp]	12.12	0.8166
AT5G44950			F-box/RNI-like/FBD-like domain...		Potri.012G099400 [exp]	16.70	0.7719
AT3G57120			Protein kinase superfamily pro...		Potri.008G037401 [exp]	17.32	0.7719
AT3G48800			Sterile alpha motif (SAM) doma...		Potri.015G104000 [exp]	18.54	0.7394
AT1G78080	AP2_ERF	CAF1, RAP2.4, W...	wound induced dedifferentiatio...		Potri.002G094200 [exp]	24.49	0.7779	DREB19
AT5G41330			BTB/POZ domain with WD40/YVTN ...		Potri.003G129300 [exp]	27.12	0.7563
AT2G46780			RNA-binding (RRM/RBD/RNP motif...		Potri.015G005500 [exp]	28.46	0.7474

Compare expression of checked genes

Potri.008G037501 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.