Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39020 301 / 2e-104 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) AT2G39030 277 / 8e-95 NATA1 N-acetyltransferase activity 1, Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) AT5G15770 42 / 0.0001 ATGNA1 glucose-6-phosphate acetyltransferase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G224800 [exp] 423 / 2e-152 AT2G39020 303 / 7e-105 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Potri.008G037600 [exp] 313 / 3e-109 AT2G39020 273 / 6e-93 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023533 [exp] 333 / 9e-116 AT2G39020 315 / 8e-109 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Lus10040418 [exp] 330 / 1e-115 AT2G39020 308 / 4e-107 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0257 [poplar] [flax] Acetyltrans PF00583 [poplar] [flax] Acetyltransf_1 Acetyltransferase (GNAT) family
Representative CDS sequence Show only first row Show all	>Potri.008G037700.1 pacid=42805775 polypeptide=Potri.008G037700.1.p locus=Potri.008G037700 ID=Potri.008G037700.1.v4.1 annot-version=v4.1 ATGGCCGCCGCAGCCCCGCCCCCACCGCCAACCCCCGCCCCCTCCGCCCCTACAGGCCTCCCAGACTCAGACTCAACACCAGTAGGCCACCCTCTCTTCG CCAGGATCCGCCTAGCAACACCACTAGACATCCCTCACATCCACAAACTCATCCACCAAATGGCCATCTTTGAAAAGTTAACCCACCTTTTCACTGCCAC AGAATCCTCCCTTGCCTCTACCCTCTTCAAGTCTCCACCTTTCCTATCTTTCACCATCTTCCTTCTTGAAGTCTCCTCACACCCTTTTGAAAAAGATTCG AACTTCCACTCTCAAAGCTTCACTCCCATTGAAAGAATTTTCAATCTTGATCATTCTTTAATAGACCCAGAAGCTGAGACTTTCAAAAATGGGATCAATG GTGATGTTGTTGTTGCTGGGTTTGTTTTGTTTTTTCCAAATTTCTCAACTTTTTTGGGGAAGCCAGGGTTTTATGTGGAGGATTTGTTTGTGAGGGAGTG CTATAGAAGAAAGGGTCTAGGGAAGTTGTTGCTTTCTGCTGTGGCTTCACAGGCCGTGAAAATGGGGTATGGGAGAGTGGAATGGGTCGTTCTTGACTGG AATGTTAATGCTATCAAGTTTTACGAGGAAATGGGTGCTAATGTTTTGCCAGAATGGAGGATTTGCCGGCTGACTGGCCCTGCACTTGAGGCTTATCGTG ATGCTATTTGA
AA sequence Show only first row Show all	>Potri.008G037700.1 pacid=42805775 polypeptide=Potri.008G037700.1.p locus=Potri.008G037700 ID=Potri.008G037700.1.v4.1 annot-version=v4.1 MAAAAPPPPPTPAPSAPTGLPDSDSTPVGHPLFARIRLATPLDIPHIHKLIHQMAIFEKLTHLFTATESSLASTLFKSPPFLSFTIFLLEVSSHPFEKDS NFHSQSFTPIERIFNLDHSLIDPEAETFKNGINGDVVVAGFVLFFPNFSTFLGKPGFYVEDLFVRECYRRKGLGKLLLSAVASQAVKMGYGRVEWVVLDW NVNAIKFYEEMGANVLPEWRICRLTGPALEAYRDAI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G39020			Acyl-CoA N-acyltransferases (N...		Potri.008G037700 [exp]	0	1
					Potri.010G065733 [exp]	2.82	0.9246
AT5G09995			unknown protein		Potri.007G081800 [exp]	4.00	0.8934
AT4G38220		AQI	aquaporin interactor, Peptidas...		Potri.009G169300 [exp]	4.69	0.8843
AT3G12810		CHR13, SRCAP, P...	PHOTOPERIOD-INDEPENDENT EARLY ...		Potri.012G057601 [exp]	6.48	0.9051
AT3G58590			Pentatricopeptide repeat (PPR)...		Potri.019G091000 [exp]	10.39	0.8842
AT1G29320			Transducin/WD40 repeat-like su...		Potri.012G095100 [exp]	13.78	0.8604
AT3G52210			S-adenosyl-L-methionine-depend...		Potri.010G233100 [exp]	17.54	0.8236
AT5G56780		ATET2	ARABIDOPSIS EFFECTOR OF TRANSC...		Potri.006G150000 [exp]	18.16	0.8525
AT2G35030			Pentatricopeptide repeat (PPR)...		Potri.001G204500 [exp]	22.24	0.8170
AT5G56270	WRKY	ATWRKY2, WRKY2,...	ARABIDOPSIS THALIANA WRKY DNA-...		Potri.019G053900 [exp]	22.44	0.8885

Compare expression of checked genes

Potri.008G037700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.