Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04240 996 / 0 JUMONJI ELF6 EARLY FLOWERING 6, Zinc finger (C2H2 type) family protein / transcription factor jumonji (jmj) family protein (.1) AT3G48430 298 / 3e-82 JUMONJI JMJ12, REF6 Jumonji domain-containing protein 12, relative of early flowering 6 (.1) AT5G46910 201 / 5e-53 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1) AT4G20400 165 / 4e-41 PKDM7B, JMJ14 JUMONJI 14 (.1.2) AT1G08620 157 / 2e-38 PKDM7D Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1), Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.2) AT2G34880 152 / 3e-37 PKDM7C, MEE27 maternal effect embryo arrest 27, Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1) AT1G30810 150 / 1e-36 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1), Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.2) AT1G63490 147 / 2e-35 transcription factor jumonji (jmjC) domain-containing protein (.1) AT2G38950 112 / 1e-24 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1) AT4G06634 54 / 4e-07 C2H2ZnF zinc finger (C2H2 type) family protein (.1), zinc finger (C2H2 type) family protein (.2), zinc finger (C2H2 type) family protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G224700 [exp] 2657 / 0 AT5G04240 956 / 0.0 EARLY FLOWERING 6, Zinc finger (C2H2 type) family protein / transcription factor jumonji (jmj) family protein (.1) Potri.015G089000 [exp] 312 / 4e-86 AT3G48430 807 / 0.0 Jumonji domain-containing protein 12, relative of early flowering 6 (.1) Potri.012G092400 [exp] 300 / 2e-82 AT3G48430 803 / 0.0 Jumonji domain-containing protein 12, relative of early flowering 6 (.1) Potri.003G096100 [exp] 199 / 4e-52 AT5G46910 924 / 0.0 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1) Potri.001G137700 [exp] 199 / 7e-52 AT5G46910 893 / 0.0 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1) Potri.013G046700 [exp] 161 / 1e-39 AT1G08620 1281 / 0.0 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1), Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.2) Potri.019G018700 [exp] 160 / 2e-39 AT1G08620 1260 / 0.0 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1), Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.2) Potri.003G126600 [exp] 154 / 4e-37 AT1G63490 1013 / 0.0 transcription factor jumonji (jmjC) domain-containing protein (.1) Potri.001G440900 [exp] 152 / 7e-37 AT4G20400 733 / 0.0 JUMONJI 14 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037989 [exp] 1140 / 0 AT5G04240 988 / 0.0 EARLY FLOWERING 6, Zinc finger (C2H2 type) family protein / transcription factor jumonji (jmj) family protein (.1) Lus10009218 [exp] 1132 / 0 AT5G04240 993 / 0.0 EARLY FLOWERING 6, Zinc finger (C2H2 type) family protein / transcription factor jumonji (jmj) family protein (.1) Lus10019482 [exp] 254 / 4e-68 AT3G48430 984 / 0.0 Jumonji domain-containing protein 12, relative of early flowering 6 (.1) Lus10035385 [exp] 201 / 7e-53 AT5G46910 843 / 0.0 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1) Lus10030988 [exp] 199 / 4e-52 AT5G46910 850 / 0.0 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1) Lus10043332 [exp] 181 / 1e-45 AT3G48430 877 / 0.0 Jumonji domain-containing protein 12, relative of early flowering 6 (.1) Lus10042566 [exp] 157 / 4e-38 AT3G04490 1382 / 0.0 unknown protein Lus10022024 [exp] 157 / 6e-38 AT3G04490 1370 / 0.0 unknown protein Lus10008495 [exp] 156 / 1e-37 AT1G63490 916 / 0.0 transcription factor jumonji (jmjC) domain-containing protein (.1) Lus10008063 [exp] 152 / 4e-37 AT1G30810 901 / 0.0 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1), Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.008G037800.1 pacid=42808429 polypeptide=Potri.008G037800.1.p locus=Potri.008G037800 ID=Potri.008G037800.1.v4.1 annot-version=v4.1 ATGGGTAATGTGGAAATACCCAAATGGCTAAAAGGGTTGCCTTTGGCACCCGAGTTTAGGCCAACTGATACTGAATTTGCAGACCCAGTTGCATATATAT CGAAAATTGAGAAGGAAGCTAGTGCTTTTGGGATTTGTAAGATCATACCCCCATTGCCTAAGCCTTCGAAAAGATATGTTTTTAGTAACTTGAATAGGTC GCTTTCTAAGTGTCCGGAGTTGGGTGATGATGTGGACTTGTCGAATGTTTGTTCCTCGTCAAACGGTGGTTTAAGGGATGGTGGTAATGATGGGGAGAAT AGGGCGGTGTTTACAACTAGGCAGCAGGAGTTAGGGCAGTGTGTGAAGAAAGCAAAAGGGATGGTTAAGGAGAATCTGCAATCAGGTGTTCATAAGCAAG TGTGGCAAAGTGGGGAGGCTTACACATTGGAACAGTTTGAGTCAAAGTCTAAGGCTTTTGCAAGGAGTTTGTTAGGTATGCTTAAGGAGGTTAATCCATT GGTTATAGAGGCATTGTTTTGGAAGGCAGCTTCTGAGAAGCCTATCTACGTGGAATATGCAAATGATGTGCCTGGTTCGGGTTTTGGGGAACCAGAAAGC CACTCTAGGTACTTTCCTAGACGGAGGAGGAAGAGGGCATCATATCAGTCTTATCGCAGGAGTAGAGAAAGCCCTGTTTGCAGTACAAATGATATGGATG ATGTAAAGAATTCCCATAATGATGAGGTTAAAGGTGTTTCCATTAAGAATGTGCCAAGCTTGTGTTTGGAGACGACACCCAGGTCATCTATGGCATCTTT GACTTCATTCGCAGAGGATAATCTGATGTATTCTAAGCAAAAAAGTGTAACTGCAACTAATGATATGGAAGGTACTGCAGGTTGGAAACTTTCAAATAGC CCTTGGAATCTGCAGGTGATCGCGCGCTCACCTGGCTCTCTTACACGATTTATGCCAGATGATATCCCAGGTGTTACTTCACCTATGGTCTACATTGGTA TGTTGTTTAGTTGGTTTGCTTGGCATGTTGAGGATCATGAACTTCACAGCATGAATTTTCTACATACCGGTTCTCCAAAGACTTGGTATGCTGTCCCTGG AGATTATGTATTTTCTTTTGAGGAAGTTATACGCACTGAGGCTTATGGTGGCAATATTGATCGCTTAGCTGCCCTGAGTCTGTTGGGTGAGAAGACAACT CTTCTGTCTCCTAAAGCAATAATTTCCTCAGGCATTCCTTGTTGTAGGTTAGTACAGAATCCTGGTGAATTTGTTGTGACTTTTCCAAGGGCCTACCATG TAGGATTCAGCCACGGTTTTAACTGTGGGGAAGCTGCCAATTTTGGAACTCCACAATGGCTTAAAGTAGCCAAGGAAGCTGCGGTCCGTAGAGCTGCCAT GAACTATCTTCCCATGCTTTCACATCAGCAGCTTCTATACCTGTTGACCATGTCTTTTGTTTCAAGGGTGCCGAGATCCTTACTACCAGGTGCTCGGAGT TCTCGTCTTAGAGATCGTCAGAGAGAAGAAAGAGAGTTGTCAGTAAAGGAGGCTTTTCTAGAAGACATGTTAAAAGAAAATGACATTTTATCTGCTTTTC TTGAGAAAAACTCCACTTGTCATGCGGTGATATGGAACCCTGATTTGCTTCCTTGTGCAAGTAAAGAGTCTCACTTACTCAACATAACTTCTACTATTAC TACCACACCAAAACAAAATGCTTCCCATAATAATTTCGATGTAAATAGGAATTGCAATGAGAATGACCTGTTTAAGGAGATGAGCTTGTATATGGAAACT CTCGATGATTTATATATGGAAGAAGATGATTTGTCATGTGATTTTCAAGTTGATTCGGGGACATTAGCATGTGTGGCTTGTGGAATCCTTGGTTTTCCTT TTATGTCAGTGTTGCAACCACATGAGAAAGCATCAATAGAATTGATGCCCGGCGAAGAGCCAAGAGTTACAAGAATTGATAATGTTCAGCCCTCTTTAGA CTCTGATAGCACCGGCAAAGGCTCTGTTTCAGATGATCATGGTCCTGTCAAAGATTATTCTGTGCCTCTGAAGGATCTTCCAATGCCCACAGGGTGGAAC ACTTCTCATAAGTTTTTGAGACCTCGTATTTTCTGCCTGGAGCATGGTGTCCAAATTGAGGAGCTGTTACAGTCTAAAGGTGGAGCTAACTTGCTTATAA TTTGCCATTCAGACTATCAAAAAATAAAAGCACATGCTTATGCCATCGCTGAGGAAATTGAGAGTCCTTTCAATTATAATGAGGTTCCTTTAGAAGCTGC ATTGAAAGAAGATCTGAACTTGATAAATCTTGCAATTGATGATGAAGATCATCATGAATGTGGAGAAGACTGGACATCAAAACTGGGCATCAACTTACGG TATTGTGTAAAGATCAGAAAGAACTCTCCATCTAAGAAAGTCCAACATGCATTGGCATTGGGAGGATTATTCTCTGACAGAAGTCTCACAGATTTCTTAA ACATCAAATGGCAATCTAGAAGATCTCGGTCAAGAATAAAGTTAAATCAGCCTTTCCATCCTAAACCATGCAAGATTATTGAACCAGACAAAGATGAAAT GTCGGGGAATAAGTCAGATGGTCTCACTGTCAAAAAAGAGGAAAAACTTGTTCAGTACACTAGAAGGAAGTACAAGGTAAAAATAGATTATTCAACAAAT GGGCTTGAAGGATGCTCTAGAAGGTGCTTTGCAGAAGAGGTTTCAGGAGCTAGTGGTGATGATCCTGATAAATATACTGAACAAACAACTGTAATTTACC CTTGCAATATTGGGATTACCAGAAGTGGTTCTGCAGGATTTGGTTTTTCTCCCATTGAAGATCCTGAAATGCTGCATGAAGTCAAGGTGCTTGAAGCAGC TGGTGGTTTGACCTTGAATTCTGCTCCATCACAAGATGCATGTTCAGTTCTCACTGCTACTGTTGCTGTCAAAAGTGTTGGGGGCCAGATTGAGGATCAA CTGCTGAAGGAATCAAAAAATGCGAGAAATATTTGTAATGTAAAAGCCAGTGGTACTTCTGAGATAGAGCATCAGATAAATGCCTCTGGAGGAACCAGTG AAAAACAGGATTTTTACGCCACAAAATGCTGTAGTCCATTCATCACTGTAGCTAATGAAAGATTTGAAATGCAGAGAGAGGATCAAGTTTTGGGAAATGT CAACATGGGTGAGACTTGTAATATGGTTTCTGAAGGGCAACAGAGGGTCCTGGATGATGGCGATGCTTCAGTAGACGAGGTTTCTGATCTTGCTAACGTA GCAAGTTTACATGTTTCTCCCCCCCCCATCGGACTAAGGGCGGATGTAGTTGTGGAGAATTCTTTCATTAACAATGAGGTATCTCCTCCTGTGACTTTGG ATGATGAAGTGAAAAAAGAACTTGTGACTAAAAACAGAACTAATGGTGACCAATGCTCTTCAAGTGATGACACATTGATGAATCAGCCTACTACCTCACT GGATGAAAGATGTGGTCATGAGCAAGAGACCCGTGCTGTACAAAATAAGACGCAGAAAGAAGCTGAAATAAAAAATGGGAGTAATGATGAAATCGTTCCG AGTAATGTTATTAGTGTGACTAATCTTGTGCCTATAGATGAAAGTTCTGAATTTCATAGAGAGCTGCATGCCACAGTCAACTTGTGCAATGGCATGGCTT TTGAAAATGGCAAGCAGCTGGTGTTTCAGACCACAAATGATTCTAACAAGGAACTTATCTCATGTTCTGTTGCACAAATGGAAATAAATTCATCTACTGC TTCATCAGAATTCTCTAAACTTCATAGGCAGGCCTATGCTGAAAATGATTTGTGCAGTGGCTCAACTTTGGACACCATTGTGCCACCAGAAATTCCAACT ACAGACATACGCACTGTGGAGGAACTTGCCTCTAATTCTGCAACCATAAATCAAGAACTTTCTGAAGCTTCAAAAGAGATTTGTGCTATTCAAGACTCGT ATGCTTGCATGGATTTAGAACCTGAAGTAGAGAAGGAAATTCATTCCAGTGATGGGGTGACTAGAGACAGTGAGGTGCAGAAAATACACCAGGGCACAAG TTTGATTAATGAGGACATACATGTTTCTGCTCGTGTTATTCTGGTAAATCAGCCGCCGACTCCTTCCCCAGTTATAAAATGTTCCAACATTGATGACAAA TCATGTGTTGGAGAAAGCATGGTGACGTGCAACAAATTTTTTTCATCTCAGGAGATTGAGAGCATCGAGTCTGCTGTTGTAGACTCTAGACCAACTGCTG GAAAGGGAAGAAAAAGAAAGGGTGAAGTGGAGCAGCTAACAGAAAACAAGTTCGATAGCAATGGCTTTATTAGGAGTCCATGCGAAGGATTGAGACCGAG GGCTGGGAAAGATGTTGGGAAATCAGCTGAGGAGAATCCAATACCAAAGAGGTTAAAGAAACCTTCTAATGTTTCAGTTTCTCGCTCAAAAAGGAAAGAA ATCACACAAAGATCTTACAAGTGTGACCTAGAAGGTTGCCGCATGAGGTTTGAGACAAAAGCAGAGTTACAGTTGCACAAGGGCAATCGATGCACATATG ATGGATGTGGTAAGAAGTTTAGTTCCCACAAATATGCAATAGTTCATCAACGTGTTCATGAAGATGATAGACCCCTCAAGTGTCCATGGAAGGGTTGCAC CATGTCATTCAAGTGGGCATGGGCTAGGATTGAGCATATACGGGTGCACACTGGTGAAAAGCCATACCAGTGCAAGGTCGATGGCTGTGGCCTTTCTTTC AGGTTTGTATCAGACTTTAGTCGGCATAGGAGGAAAACAGGACACTATTTGAACACACCTGACTGA
AA sequence Show only first row Show all	>Potri.008G037800.1 pacid=42808429 polypeptide=Potri.008G037800.1.p locus=Potri.008G037800 ID=Potri.008G037800.1.v4.1 annot-version=v4.1 MGNVEIPKWLKGLPLAPEFRPTDTEFADPVAYISKIEKEASAFGICKIIPPLPKPSKRYVFSNLNRSLSKCPELGDDVDLSNVCSSSNGGLRDGGNDGEN RAVFTTRQQELGQCVKKAKGMVKENLQSGVHKQVWQSGEAYTLEQFESKSKAFARSLLGMLKEVNPLVIEALFWKAASEKPIYVEYANDVPGSGFGEPES HSRYFPRRRRKRASYQSYRRSRESPVCSTNDMDDVKNSHNDEVKGVSIKNVPSLCLETTPRSSMASLTSFAEDNLMYSKQKSVTATNDMEGTAGWKLSNS PWNLQVIARSPGSLTRFMPDDIPGVTSPMVYIGMLFSWFAWHVEDHELHSMNFLHTGSPKTWYAVPGDYVFSFEEVIRTEAYGGNIDRLAALSLLGEKTT LLSPKAIISSGIPCCRLVQNPGEFVVTFPRAYHVGFSHGFNCGEAANFGTPQWLKVAKEAAVRRAAMNYLPMLSHQQLLYLLTMSFVSRVPRSLLPGARS SRLRDRQREERELSVKEAFLEDMLKENDILSAFLEKNSTCHAVIWNPDLLPCASKESHLLNITSTITTTPKQNASHNNFDVNRNCNENDLFKEMSLYMET LDDLYMEEDDLSCDFQVDSGTLACVACGILGFPFMSVLQPHEKASIELMPGEEPRVTRIDNVQPSLDSDSTGKGSVSDDHGPVKDYSVPLKDLPMPTGWN TSHKFLRPRIFCLEHGVQIEELLQSKGGANLLIICHSDYQKIKAHAYAIAEEIESPFNYNEVPLEAALKEDLNLINLAIDDEDHHECGEDWTSKLGINLR YCVKIRKNSPSKKVQHALALGGLFSDRSLTDFLNIKWQSRRSRSRIKLNQPFHPKPCKIIEPDKDEMSGNKSDGLTVKKEEKLVQYTRRKYKVKIDYSTN GLEGCSRRCFAEEVSGASGDDPDKYTEQTTVIYPCNIGITRSGSAGFGFSPIEDPEMLHEVKVLEAAGGLTLNSAPSQDACSVLTATVAVKSVGGQIEDQ LLKESKNARNICNVKASGTSEIEHQINASGGTSEKQDFYATKCCSPFITVANERFEMQREDQVLGNVNMGETCNMVSEGQQRVLDDGDASVDEVSDLANV ASLHVSPPPIGLRADVVVENSFINNEVSPPVTLDDEVKKELVTKNRTNGDQCSSSDDTLMNQPTTSLDERCGHEQETRAVQNKTQKEAEIKNGSNDEIVP SNVISVTNLVPIDESSEFHRELHATVNLCNGMAFENGKQLVFQTTNDSNKELISCSVAQMEINSSTASSEFSKLHRQAYAENDLCSGSTLDTIVPPEIPT TDIRTVEELASNSATINQELSEASKEICAIQDSYACMDLEPEVEKEIHSSDGVTRDSEVQKIHQGTSLINEDIHVSARVILVNQPPTPSPVIKCSNIDDK SCVGESMVTCNKFFSSQEIESIESAVVDSRPTAGKGRKRKGEVEQLTENKFDSNGFIRSPCEGLRPRAGKDVGKSAEENPIPKRLKKPSNVSVSRSKRKE ITQRSYKCDLEGCRMRFETKAELQLHKGNRCTYDGCGKKFSSHKYAIVHQRVHEDDRPLKCPWKGCTMSFKWAWARIEHIRVHTGEKPYQCKVDGCGLSF RFVSDFSRHRRKTGHYLNTPD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G04240	JUMONJI	ELF6	EARLY FLOWERING 6, Zinc finger...		Potri.008G037800 [exp]	0	1
AT2G45880	BZR	BAM7, BMY4	BETA-AMYLASE 4, beta-amylase 7...		Potri.002G159300 [exp]	1.00	0.8142
AT3G17850			Protein kinase superfamily pro...		Potri.015G035600 [exp]	8.71	0.7484
AT5G49980		AFB5	auxin F-box protein 5 (.1)		Potri.002G102700 [exp]	12.24	0.6538
AT5G22760			PHD finger family protein (.1)		Potri.004G189600 [exp]	13.41	0.6889
AT3G12010			unknown protein		Potri.006G195000 [exp]	14.07	0.5890
AT3G10390		FLD	FLOWERING LOCUS D, Flavin cont...		Potri.008G035200 [exp]	23.91	0.7333
AT1G79000		ATHAC1, ATHPCAT...	ARABIDOPSIS THALIANA P300/CBP ...		Potri.004G104201 [exp]	24.08	0.7308
AT5G07740			actin binding (.1)		Potri.012G067900 [exp]	24.28	0.6992
AT5G16780		MDF, DOT2	MERISTEM-DEFECTIVE, DEFECTIVEL...		Potri.003G148501 [exp]	27.27	0.7234
AT3G10390		FLD	FLOWERING LOCUS D, Flavin cont...		Potri.010G227200 [exp]	27.56	0.6644

Compare expression of checked genes

Potri.008G037800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.