Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64290 175 / 3e-51 F-box protein-related (.1) AT1G64295 161 / 3e-46 F-box associated ubiquitination effector family protein (.1) AT5G41720 114 / 2e-30 unknown protein AT2G05360 92 / 1e-20 unknown protein AT5G49610 92 / 2e-20 F-box family protein (.1) AT5G07610 71 / 4e-13 F-box family protein (.1) AT4G12560 67 / 7e-12 CPR1, CPR30 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) AT1G30790 64 / 4e-11 F-box and associated interaction domains-containing protein (.1) AT4G22390 58 / 4e-09 F-box associated ubiquitination effector family protein (.1) AT1G19160 57 / 7e-09 F-box family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G224400 [exp] 541 / 0 AT1G64295 161 / 1e-45 F-box associated ubiquitination effector family protein (.1) Potri.014G187100 [exp] 437 / 5e-154 AT1G64295 132 / 2e-35 F-box associated ubiquitination effector family protein (.1) Potri.008G214000 [exp] 425 / 4e-149 AT1G64295 140 / 3e-38 F-box associated ubiquitination effector family protein (.1) Potri.017G066400 [exp] 421 / 2e-147 AT1G64295 125 / 9e-33 F-box associated ubiquitination effector family protein (.1) Potri.007G037500 [exp] 407 / 5e-142 AT1G64295 130 / 9e-35 F-box associated ubiquitination effector family protein (.1) Potri.006G167500 [exp] 364 / 1e-125 AT1G64290 118 / 2e-30 F-box protein-related (.1) Potri.001G462650 [exp] 298 / 4e-99 AT1G64295 121 / 3e-31 F-box associated ubiquitination effector family protein (.1) Potri.010G149000 [exp] 109 / 6e-27 AT5G49610 528 / 0.0 F-box family protein (.1) Potri.015G028500 [exp] 94 / 5e-21 AT5G49610 78 / 1e-15 F-box family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017086 [exp] 110 / 4e-27 AT5G49610 500 / 7e-179 F-box family protein (.1) Lus10037802 [exp] 107 / 4e-26 AT5G49610 497 / 1e-177 F-box family protein (.1) Lus10011415 [exp] 93 / 3e-21 AT5G41720 52 / 1e-07 unknown protein Lus10041733 [exp] 71 / 4e-13 AT5G07610 79 / 1e-15 F-box family protein (.1) Lus10024021 [exp] 67 / 4e-12 AT5G07610 79 / 9e-16 F-box family protein (.1) Lus10003922 [exp] 59 / 3e-09 AT3G26010 60 / 1e-09 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10037467 [exp] 58 / 5e-09 AT3G26010 61 / 1e-09 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10014320 [exp] 57 / 1e-08 AT5G07610 74 / 2e-14 F-box family protein (.1) Lus10036954 [exp] 54 / 1e-07 ND 48 / 5e-06 Lus10038606 [exp] 49 / 3e-06 AT3G07870 112 / 1e-27 F-box and associated interaction domains-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0162 [poplar] [flax] FBA PF08268 [poplar] [flax] FBA_3 F-box associated domain
Representative CDS sequence Show only first row Show all	>Potri.008G038000.1 pacid=42807979 polypeptide=Potri.008G038000.1.p locus=Potri.008G038000 ID=Potri.008G038000.1.v4.1 annot-version=v4.1 ATGGAGTCCGATCATGATTTTTGTTTAGATATCATCTTTGAGATCTTAACACGTTCATCAATGGAAACGGTAGAGAAATGTAGGCTTCTTTCCAAGGAAT GTAACAAGATCACCTATGAGTCTACCTTTACCAATCATCATAGCCAAAGAACTAACATCATCTCTGGCTTTTTTATACAAAGCATGATCCGCAACAAATT TTATTCTTCCTTTGTGTCTGTTGACACCTTGAAGCCTTATCCGAAATTGTCCCTCAATTTCTTACCTGCTAGCATAGAGATTGTGGCTTCAACAAACCAA GGTCTTTTGCTTTGTCAAACTCATCATCGACCACAATATTATGTATGCAAGCCTACCACCAAACAATGGCAAATAATCCCAAATCCAAAGATGCGATACC AAACTTTAGAAACTAGCATGATTGTGATAGGATCAAACCCTTTGCATTACAAGATAGTAAGATTCTCAGAGCCAAAAACTCGCTATCAAGATAAAGAGTT TTATCGATATCACTGGGTTAGATGTGAGTTGTTTGATTCAAAGACTTGGAAGTGGAAGCAATTGGAGGAAGTAAAGTTGCCACAAACAGAGTTACTTAGT CGCAATACTAACGTGTCTGTAAATGGCTCGCTTCATTGGCTTACCTGGAAAAGAAACGACATATTTGCATTTCATGTAAACAAGGAGAGCTACAGCATGT TTTCACTTCCTTTACCAGTTTCTGAGGATAACAAAAGCAAGGACATTGCTCTTGTCAGATACAAGGGAAAACTTGCCATAACCTCCATTGGTAGAGAAGA TAGTTTCATGGAATTATGGGTCATGGAGAATTATGACAGAAAGGAATGGAACAAGACACATACAGTAAACATAGAAGCTTTAAGAAGAAAAGAACCCTAT ACAAGGCCTGTGGCCTTCTGCAATGCTGACATTGCACTAATGAAAGAACATGATCGATGCGTGACGTTCTTTAACATCACAAATGGAAGTACTGATAGGC TGTCATTAGAGAAGAACTTAAATCATGGATGTTTTCCATTTCAATCCAATTTTGAGCTGAGTGATTTGATGGGTGACTCCGCGTCAAAACAGGTTTCGGA CAATACTTTGCTTTAA
AA sequence Show only first row Show all	>Potri.008G038000.1 pacid=42807979 polypeptide=Potri.008G038000.1.p locus=Potri.008G038000 ID=Potri.008G038000.1.v4.1 annot-version=v4.1 MESDHDFCLDIIFEILTRSSMETVEKCRLLSKECNKITYESTFTNHHSQRTNIISGFFIQSMIRNKFYSSFVSVDTLKPYPKLSLNFLPASIEIVASTNQ GLLLCQTHHRPQYYVCKPTTKQWQIIPNPKMRYQTLETSMIVIGSNPLHYKIVRFSEPKTRYQDKEFYRYHWVRCELFDSKTWKWKQLEEVKLPQTELLS RNTNVSVNGSLHWLTWKRNDIFAFHVNKESYSMFSLPLPVSEDNKSKDIALVRYKGKLAITSIGREDSFMELWVMENYDRKEWNKTHTVNIEALRRKEPY TRPVAFCNADIALMKEHDRCVTFFNITNGSTDRLSLEKNLNHGCFPFQSNFELSDLMGDSASKQVSDNTLL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G64290			F-box protein-related (.1)		Potri.008G038000 [exp]	0	1
AT1G16260			Wall-associated kinase family ...		Potri.014G148400 [exp]	24.24	0.6806
					Potri.006G226200 [exp]	76.30	0.6373
AT1G13410			Tetratricopeptide repeat (TPR)...		Potri.010G123901 [exp]	84.10	0.6807
AT1G11260		ATSTP1, STP1	sugar transporter 1 (.1)		Potri.004G110630 [exp]	114.00	0.6224
AT5G47530			Auxin-responsive family protei...		Potri.019G096600 [exp]	120.06	0.6438
AT1G16820			vacuolar ATP synthase catalyti...		Potri.003G175366 [exp]	123.32	0.6584
AT4G09800		RPS18C	S18 ribosomal protein (.1)		Potri.002G064632 [exp]	137.36	0.6524
AT5G38200			Class I glutamine amidotransfe...		Potri.010G120600 [exp]	165.40	0.6289
					Potri.008G224138 [exp]	177.68	0.6386
AT5G12890			UDP-Glycosyltransferase superf...		Potri.001G016500 [exp]	200.27	0.6250

Compare expression of checked genes

Potri.008G038000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.