Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03300 622 / 0 ADK2 adenosine kinase 2 (.1) AT3G09820 607 / 0 ADK1, ATADK1 adenosine kinase 1 (.1.2) AT1G19600 62 / 1e-10 pfkB-like carbohydrate kinase family protein (.1) AT1G17160 60 / 9e-10 pfkB-like carbohydrate kinase family protein (.1.2) AT4G27600 60 / 1e-09 NARA5 GENES NECESSARY FOR THE ACHIEVEMENT OF RUBISCO ACCUMULATION 5, pfkB-like carbohydrate kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G224300 [exp] 676 / 0 AT5G03300 620 / 0.0 adenosine kinase 2 (.1) Potri.002G034000 [exp] 63 / 6e-11 AT1G19600 556 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Potri.005G229100 [exp] 63 / 8e-11 AT1G19600 558 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Potri.011G114100 [exp] 55 / 4e-08 AT1G17160 474 / 8e-168 pfkB-like carbohydrate kinase family protein (.1.2) Potri.013G078600 [exp] 52 / 4e-07 AT4G27600 588 / 0.0 GENES NECESSARY FOR THE ACHIEVEMENT OF RUBISCO ACCUMULATION 5, pfkB-like carbohydrate kinase family protein (.1) Potri.017G029000 [exp] 43 / 0.0002 AT3G59480 568 / 0.0 pfkB-like carbohydrate kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023532 [exp] 625 / 0 AT5G03300 599 / 0.0 adenosine kinase 2 (.1) Lus10040417 [exp] 623 / 0 AT5G03300 599 / 0.0 adenosine kinase 2 (.1) Lus10023197 [exp] 613 / 0 AT5G03300 590 / 0.0 adenosine kinase 2 (.1) Lus10023021 [exp] 568 / 0 AT5G03300 546 / 0.0 adenosine kinase 2 (.1) Lus10009220 [exp] 526 / 0 AT5G03300 501 / 7e-176 adenosine kinase 2 (.1) Lus10042467 [exp] 67 / 3e-12 AT1G17160 497 / 6e-177 pfkB-like carbohydrate kinase family protein (.1.2) Lus10026199 [exp] 66 / 2e-11 AT1G17160 496 / 8e-173 pfkB-like carbohydrate kinase family protein (.1.2) Lus10024268 [exp] 59 / 2e-09 AT1G19600 522 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10007397 [exp] 55 / 3e-08 AT1G19600 518 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10013645 [exp] 47 / 2e-05 AT4G27600 580 / 0.0 GENES NECESSARY FOR THE ACHIEVEMENT OF RUBISCO ACCUMULATION 5, pfkB-like carbohydrate kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0118 [poplar] [flax] Ribokinase PF00294 [poplar] [flax] PfkB pfkB family carbohydrate kinase
Representative CDS sequence Show only first row Show all	>Potri.008G038100.10 pacid=42806410 polypeptide=Potri.008G038100.10.p locus=Potri.008G038100 ID=Potri.008G038100.10.v4.1 annot-version=v4.1 ATGGCGTCCGAGGGGATCTTGTTGGGTATGGGAAACCCACTCCTTGACATTTCTGCTGTTGTCGACGATGATTTCTTGCAAAAGTATGACATCAAGCTGA ACAATGCTATCCTTGCGGAAGACAAGCACATACCCATGTACGATGAGATGGCCAGCAAGTATACCGTAGAATTCATTGCAGGAGGTGCTACTCAAAACTC AATCAAAGTTGCACAGTGGATGCTCCAAATTCCTGGTGCAACCAGCTATATGGGCTGCATTGGAAAGGACAAGTTTGGGGAGGAGATGAAGAAAAACTCA ATGAAAGCTGGTGTTAATGTACATTATTATGAGGATGAGGCTGCTCCAACTGGAACATGTGCTGTTTGTGTTGTCGGTGGTGAGAGGTCGCTTATTGCAA ATTTGTCTGCTGCAAATTGTTACAAATCTGAGCACTTAAAGAGGCCAGAAAATTGGGCGCTTGTTGAAAAGGCAAAATATTTCTACATTGCCGGGTTCTT CCTTACCGTGTCTCCTGAATCCATTATGCTTGTTGCTGAACATGCAGCTGCAAACAACAAGATCTTCACGATGAATCTTTCTGCTCCATTTATCTGCGAG TTCTTCAAGGATGTGCAGGAGAATGCTCTACCTTATATGGACTACGTCTTTGGAAATGAGACTGAAGCCAGAACCTTTGCCAAGGTTCATGGATGGGAGA CTGAGAATGTTGAGGAGATTGCTCTAAAGATTTCCCAATGGCCCAAGGCATCAGGGGCACACAAGAGGATTACTGTTATTACTCAGGGTGCAGATCCTGT TGTGGTTGCTGAGGATGGGAAGGTGAAATTATTCCCTGTGATATTGTTACCCAAGGAGAAGCTTGTTGACACCAATGGAGCAGGTGATGCATTTGTTGGT GGATTTTTGTCCCAACTGGTACAAGAGAAGCCCATTGAAGACTGTGTGAAAGCTGGTTGCTATGCGGCAAATGTCATTATCCAAAGGTCAGGTTGCACAT ATCCTGAAAAGCCCGATTTCAGTTAG
AA sequence Show only first row Show all	>Potri.008G038100.10 pacid=42806410 polypeptide=Potri.008G038100.10.p locus=Potri.008G038100 ID=Potri.008G038100.10.v4.1 annot-version=v4.1 MASEGILLGMGNPLLDISAVVDDDFLQKYDIKLNNAILAEDKHIPMYDEMASKYTVEFIAGGATQNSIKVAQWMLQIPGATSYMGCIGKDKFGEEMKKNS MKAGVNVHYYEDEAAPTGTCAVCVVGGERSLIANLSAANCYKSEHLKRPENWALVEKAKYFYIAGFFLTVSPESIMLVAEHAAANNKIFTMNLSAPFICE FFKDVQENALPYMDYVFGNETEARTFAKVHGWETENVEEIALKISQWPKASGAHKRITVITQGADPVVVAEDGKVKLFPVILLPKEKLVDTNGAGDAFVG GFLSQLVQEKPIEDCVKAGCYAANVIIQRSGCTYPEKPDFS

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G03300		ADK2	adenosine kinase 2 (.1)		Potri.008G038100 [exp]	0	1
AT2G40890		REF8, CYP98A3, ...	cytochrome P450, family 98, su...		Potri.006G033300 [exp]	2.44	0.9443	C3H1,CYP98.1
AT4G27880			Protein with RING/U-box and TR...		Potri.012G015500 [exp]	5.47	0.9182	SINAT4.2
AT3G52790			peptidoglycan-binding LysM dom...		Potri.010G231000 [exp]	6.00	0.8996
AT5G54160		ATOMT1	O-methyltransferase 1 (.1)		Potri.012G006400 [exp]	6.16	0.9314	OMT1.1
AT5G46800		BOU	A BOUT DE SOUFFLE, Mitochondri...		Potri.003G091500 [exp]	7.54	0.8578	Pt-BOU.2
AT2G32720		B5 #4, B5#4, AT...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Potri.002G242500 [exp]	8.83	0.9095
AT3G17390		MAT4, SAMS3, MT...	S-ADENOSYLMETHIONINE SYNTHETAS...		Potri.008G099300 [exp]	11.31	0.8856	AdoMet1,SAMS.2
AT5G50870		UBC27	ubiquitin-conjugating enzyme 2...		Potri.015G103400 [exp]	12.24	0.8618
AT4G13930		SHM4	serine hydroxymethyltransferas...		Potri.017G059300 [exp]	12.48	0.8892	SHM4.2
AT4G00755			F-box family protein (.1.2)		Potri.014G076300 [exp]	12.64	0.8723

Compare expression of checked genes

Potri.008G038100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.