Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-PAL.2,PAL2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37040 1213 / 0 PAL1, ATPAL1 PHE ammonia lyase 1 (.1) AT3G53260 1207 / 0 PAL2, ATPAL2 phenylalanine ammonia-lyase 2 (.1) AT3G10340 1182 / 0 PAL4 phenylalanine ammonia-lyase 4 (.1) AT5G04230 1036 / 0 PAL3, ATPAL3 phenyl alanine ammonia-lyase 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G224100 [exp] 1365 / 0 AT3G53260 1240 / 0.0 phenylalanine ammonia-lyase 2 (.1) Potri.010G224200 [exp] 1350 / 0 AT2G37040 1228 / 0.0 PHE ammonia lyase 1 (.1) Potri.016G091100 [exp] 1235 / 0 AT2G37040 1267 / 0.0 PHE ammonia lyase 1 (.1) Potri.006G126800 [exp] 1225 / 0 AT2G37040 1269 / 0.0 PHE ammonia lyase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023531 [exp] 1233 / 0 AT2G37040 1198 / 0.0 PHE ammonia lyase 1 (.1) Lus10040416 [exp] 1228 / 0 AT2G37040 1194 / 0.0 PHE ammonia lyase 1 (.1) Lus10026518 [exp] 1218 / 0 AT2G37040 1256 / 0.0 PHE ammonia lyase 1 (.1) Lus10013805 [exp] 1208 / 0 AT2G37040 1245 / 0.0 PHE ammonia lyase 1 (.1) Lus10009220 [exp] 152 / 1e-38 AT5G03300 501 / 7e-176 adenosine kinase 2 (.1) Lus10001405 [exp] 122 / 6e-33 AT3G10340 122 / 3e-34 phenylalanine ammonia-lyase 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00221 [poplar] [flax] Lyase_aromatic Aromatic amino acid lyase
Representative CDS sequence Show only first row Show all	>Potri.008G038200.1 pacid=42806884 polypeptide=Potri.008G038200.1.p locus=Potri.008G038200 ID=Potri.008G038200.1.v4.1 annot-version=v4.1 ATGGAATTCTGTCAGGACTCATGCACTGGCAATGGTTCCCTGGGATTTAACCCCAATGACCCCTTGAACTGGGGCATGGTGGCAGAATCACTAAAAGGAA GCCACCTAGATGAGGTGAAGCGCATGATCGATGAGTACAGGAAGCCTGTGGTCAAGCTGGGAGGTGAGTCCCTGACCATAGGCCAAGTAACAGCGATTGC TAGCCGTGACGTTGGTGTCAAGGTAGAGCTGTCAGAGGAGGCTCGAGTTGGTGTCAAGGCTAGCAGCGACTGGGTTATGGACAGCATGAACAAGGGCACG GACAGTTATGGTGTCACCACTGGTTTCGGCGCCACCTCACATAGAAGAACCAAGCAAGGCGGAGAGCTTCAGAAGGAGCTTATCAGGTTCTTGAATGCTG GTATCTTTGGTAATGGCACGGAGTCTACTCATACATTGCCTCACTCAGCATCTAGGGCAGCTATGTTGGTCAGAATTAACACCCTTCTTCAAGGTTACTC GGGCATAAGATTTGAGATCCTAGAAGCCATCACCAAGTTGCTCAACCACAACATCACCCCATGTTTGCCACTCAGAGGAACAATCACTGCCTCCGGTGAC CTTGTCCCATTATCCTACATTGCTGGGCTCTTGACAGGCAGGCCCAATTCAAAGGCCGTGGGACCCAATGGAGAAACCCTGGCCGCTGCTGAAGCCTTCA CACTAGCTGGGATTAATGGTGGATTTTTTGAGTTGCAACCAAAGGAGGGTCTAGCACTTGTAAATGGTACTGCTGTTGGTTCTGGTCTTGCTTCGATGGT GCTTTTTGAGGCTAATGTGCTGGCAATCCTATCAGAAGTTTTGTCAGCAATTTTCGCCGAAGTTATGCAAGGAAAACCAGAGTTTACTGATCACTTGACA CATAAATTGAAGCATCATCCTGGCCAAATTGAAGCTGCAGCCATCATGGAACATATTTTAGATGGTAGCTCTTACGTTAAAGCAGCTCAAAAGTTACATG AGATTGATCCTCTACAGAAGCCTAAACAAGACCGATATGCTCTCCGAACATCTCCACAGTGGCTAGGTCCTCTGATTGAAGTGATTAGAACTTCAACGAA AATGATCGAACGAGAAATCAACTCTGTCAATGACAATCCATTGATTGATGTGTCAAGGAACAAGGCTCTACATGGAGGGAATTTCCAGGGGACTCCTATT GGTGTTTCCATGGACAACACTCGTTTGGCAATTGCTTCAATTGGCAAACTCATGTTTGCACAATTCTCTGAACTTGTTAATGACTATTACAACAACGGGT TGCCTTCAAACCTTACCGGTGGTCGCAATCCAAGCTTGGATTACGGGTTCAAAGGTGCTGAAATTGCAATGGCATCTTACTGCTCAGAGCTCCAATTTCT TGCTAACCCTGTCACCAATCATGTCCAGAGTGCTGAGCAACACAACCAAGACGTCAACTCCTTGGGCTTGATTTCTGCAAGAAAAACAGCTGAAGCTGTT GAAATATTGAAGCTCATGTCTACCACCTGGTTGGTTGCTCTATGCCAAGCCATAGACTTGAGGCACATAGAGGAGAACCTGAAGAACACAGTCAAGAACA CTGTCAGCCAAGTTGCTAAGAGAGTCCTGACAATGGGCTTCAACGGCGAGCTTCACCCCTCAAGATTCTGCGAGAAAGACTTGCTCAAGGTTGTCGACAG AGAACATGCCTTTACCTACATTGATGACCCTTGCAGTGCAACCTACCCATTAATGCAGAAACTAAGACAAGTTCTAGTTGATCACGCCCTGATGAATGGT GAGAAGGAACATAATTCAAGCACTTCGATTTTCCAAAAGATTGGAGCCTTTGAGGAAGAACTGAAGACCCTTTTGCCCAAAGAAGTAGAGAATGCTAGAC TTGAACTTGAGAATGGCAACCCAGCTATTCCAAACAGGATCACGGAATGCAGGTCATACCCCTTGTACAAGTTTGTGAGGGAAGAATTGGGAACCATTTT GCTCACCGGTGAGAAGGTCGGATCGCCTGGGGAGGAGTTTGACAAGGTATTCACAGCTATCTGTGCAGGGAAGTTGATTGATCCCATGCTGGAATGCTTG AAGGAATGGAATGGCGCTCCTCTTCCTCTTTGCTAA
AA sequence Show only first row Show all	>Potri.008G038200.1 pacid=42806884 polypeptide=Potri.008G038200.1.p locus=Potri.008G038200 ID=Potri.008G038200.1.v4.1 annot-version=v4.1 MEFCQDSCTGNGSLGFNPNDPLNWGMVAESLKGSHLDEVKRMIDEYRKPVVKLGGESLTIGQVTAIASRDVGVKVELSEEARVGVKASSDWVMDSMNKGT DSYGVTTGFGATSHRRTKQGGELQKELIRFLNAGIFGNGTESTHTLPHSASRAAMLVRINTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGD LVPLSYIAGLLTGRPNSKAVGPNGETLAAAEAFTLAGINGGFFELQPKEGLALVNGTAVGSGLASMVLFEANVLAILSEVLSAIFAEVMQGKPEFTDHLT HKLKHHPGQIEAAAIMEHILDGSSYVKAAQKLHEIDPLQKPKQDRYALRTSPQWLGPLIEVIRTSTKMIEREINSVNDNPLIDVSRNKALHGGNFQGTPI GVSMDNTRLAIASIGKLMFAQFSELVNDYYNNGLPSNLTGGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISARKTAEAV EILKLMSTTWLVALCQAIDLRHIEENLKNTVKNTVSQVAKRVLTMGFNGELHPSRFCEKDLLKVVDREHAFTYIDDPCSATYPLMQKLRQVLVDHALMNG EKEHNSSTSIFQKIGAFEEELKTLLPKEVENARLELENGNPAIPNRITECRSYPLYKFVREELGTILLTGEKVGSPGEEFDKVFTAICAGKLIDPMLECL KEWNGAPLPLC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G37040		PAL1, ATPAL1	PHE ammonia lyase 1 (.1)		Potri.008G038200 [exp]	0	1	Pt-PAL.2,PAL2
AT1G11190		ENDO1, BFN1	ENDONUCLEASE 1, bifunctional n...		Potri.011G044500 [exp]	2.82	0.8738	BFN1.1
AT4G17220		ATMAP70-5	microtubule-associated protein...		Potri.006G018000 [exp]	3.00	0.8963
AT4G01850		AtSAM2, SAM-2, ...	S-adenosylmethionine synthetas...		Potri.002G189200 [exp]	3.46	0.9183
AT4G14010		RALFL32	ralf-like 32 (.1)		Potri.017G059800 [exp]	3.60	0.8370	RALFL32.1
AT4G18425			Protein of unknown function (D...		Potri.011G058000 [exp]	4.58	0.8588
AT3G58900			F-box/RNI-like superfamily pro...		Potri.017G119200 [exp]	6.63	0.8160
AT5G07220		ATBAG3	BCL-2-associated athanogene 3 ...		Potri.001G358200 [exp]	8.12	0.8428
AT1G15950		IRX4, ATCCR1, C...	IRREGULAR XYLEM 4, cinnamoyl c...		Potri.003G181400 [exp]	10.00	0.8117	CCR.10,CCR7
AT5G53460		GLT1	NADH-dependent glutamate synth...		Potri.015G017500 [exp]	11.74	0.7888	GLT1.2
AT2G37750			unknown protein		Potri.016G101900 [exp]	13.56	0.8153

Compare expression of checked genes

Potri.008G038200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.