Plant FIBer expression Database

Potri.008G038500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G14145 80 / 7e-21 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G223700
[exp]
90 / 9e-25 AT4G14145 168 / 6e-55 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10040412
[exp]
82 / 9e-22 AT4G14145 189 / 4e-63 unknown protein
Lus10023526
[exp]
81 / 5e-21 AT4G14145 199 / 7e-67 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF14138 COX16 Cytochrome c oxidase assembly protein COX16
Representative CDS sequence
>Potri.008G038500.2 pacid=42807913 polypeptide=Potri.008G038500.2.p locus=Potri.008G038500 ID=Potri.008G038500.2.v4.1 annot-version=v4.1
ATGCGGTTAGATCTCAACCAAAACCCTGCTAATGCAGCAAATACCAAGTGTTCAGACCCTTTTACTCTGAAGGATATTGCAAAGGTGAAAGATGATAAAG
AATGGGAGATTATTGAGACAAAAGAAGCATTATCTATATCGGGACCAACAGGATCATACAAGCCTAAAAAGATATCATTGGAGGCGGAGTTAAAGGCTTT
GCAGAAGAAAGTAGACATAAACAACTTACGAGTACGAAAGTAG
AA sequence
>Potri.008G038500.2 pacid=42807913 polypeptide=Potri.008G038500.2.p locus=Potri.008G038500 ID=Potri.008G038500.2.v4.1 annot-version=v4.1
MRLDLNQNPANAANTKCSDPFTLKDIAKVKDDKEWEIIETKEALSISGPTGSYKPKKISLEAELKALQKKVDINNLRVRK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G14145 unknown protein Potri.008G038500
[exp]
0 1
AT1G13330 AHP2 Arabidopsis Hop2 homolog (.1) Potri.010G127101
[exp]
23.10 0.6461
AT5G24090 ATCHIA chitinase A (.1) Potri.014G092932
[exp]
28.21 0.6325
AT2G14760 bHLH bHLH084 basic helix-loop-helix (bHLH) ... Potri.009G089000
[exp]
32.32 0.5981
AT2G15220 Plant basic secretory protein ... Potri.001G299500
[exp]
62.16 0.5907
AT1G15125 S-adenosyl-L-methionine-depend... Potri.007G089500
[exp]
71.56 0.5856
AT3G04900 Heavy metal transport/detoxifi... Potri.001G326100
[exp]
80.11 0.5130
AT2G31335 unknown protein Potri.019G012603
[exp]
95.49 0.5021
AT4G09720 AtRABG3a RAB GTPase homolog G3A (.1.2.3... Potri.007G079700
[exp]
95.72 0.4929
AT5G24090 ATCHIA chitinase A (.1) Potri.014G092800
[exp]
113.33 0.5637 Pt-CHI3.5

Potri.008G038500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.