Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03250 722 / 0 Phototropic-responsive NPH3 family protein (.1) AT5G13600 667 / 0 Phototropic-responsive NPH3 family protein (.1) AT1G30440 655 / 0 Phototropic-responsive NPH3 family protein (.1) AT3G44820 478 / 1e-161 Phototropic-responsive NPH3 family protein (.1) AT5G66560 443 / 8e-148 Phototropic-responsive NPH3 family protein (.1) AT5G64330 405 / 3e-132 JK218, RPT3, NPH3 ROOT PHOTOTROPISM 3, NON-PHOTOTROPIC HYPOCOTYL 3, Phototropic-responsive NPH3 family protein (.1.2) AT3G50840 394 / 5e-130 Phototropic-responsive NPH3 family protein (.1) AT5G48800 358 / 1e-115 Phototropic-responsive NPH3 family protein (.1) AT4G31820 348 / 2e-112 MAB4, ENP, NPY1 NAKED PINS IN YUC MUTANTS 1, MACCHI-BOU 4, ENHANCER OF PINOID, Phototropic-responsive NPH3 family protein (.1) AT5G67385 347 / 1e-111 Phototropic-responsive NPH3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G223600 [exp] 1123 / 0 AT5G03250 683 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.016G090400 [exp] 801 / 0 AT5G03250 768 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.001G357100 [exp] 694 / 0 AT1G30440 971 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.011G091100 [exp] 683 / 0 AT1G30440 924 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.009G150500 [exp] 486 / 4e-165 AT3G44820 826 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.004G189800 [exp] 483 / 9e-164 AT3G44820 835 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.007G033900 [exp] 472 / 3e-159 AT5G66560 789 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.005G130700 [exp] 457 / 2e-153 AT5G66560 733 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.017G048200 [exp] 415 / 6e-137 AT5G64330 993 / 0.0 ROOT PHOTOTROPISM 3, NON-PHOTOTROPIC HYPOCOTYL 3, Phototropic-responsive NPH3 family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040409 [exp] 824 / 0 AT5G03250 667 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10023523 [exp] 818 / 0 AT5G03250 667 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10015871 [exp] 803 / 0 AT5G03250 666 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10009292 [exp] 795 / 0 AT5G03250 670 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10013799 [exp] 681 / 0 AT5G03250 672 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10026511 [exp] 669 / 0 AT5G03250 665 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10038531 [exp] 648 / 0 AT1G30440 915 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10023274 [exp] 647 / 0 AT1G30440 910 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10037432 [exp] 471 / 4e-159 AT5G66560 747 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10041276 [exp] 466 / 5e-157 AT5G66560 750 / 0.0 Phototropic-responsive NPH3 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0033 [poplar] [flax] POZ PF00651 [poplar] [flax] BTB BTB/POZ domain CL0033 [poplar] [flax] PF03000 [poplar] [flax] NPH3 NPH3 family
Representative CDS sequence Show only first row Show all	>Potri.008G038600.1 pacid=42806632 polypeptide=Potri.008G038600.1.p locus=Potri.008G038600 ID=Potri.008G038600.1.v4.1 annot-version=v4.1 ATGGCTTGCATGAAGCTGGGATCAAAATCAGAAGTCTTTCATCTCGATGGCCATACCTGGCTTTGCTCAACCGGGCTTCAAAGTGATGTCATTATTGAAA TTGGGGACATGTCTTTCCATCTCCACAAGTTTCCATTGCTCTCCAGAAGTGAAGTACTAGAAAATCTTATTGGAGAGCATTCTAGCGAGGACGAGAAAAG GTGTGTTCTACAACTTCATGATGTACCTGGTGGAGCCAAAACCTTCTTGCTTGCTGCCAAATTCTGCTATGGTATAAAAATGGAACTCACTGCATTGAAT GTAGTTAGTCTCAGATGTGCCGCTGAGTATCTTGGAATGAGTGAAGACTATGGGGAGGAAAACCTCATCACACAAACAGAAAATTTTCTCAATGAAGTAT TTGGCAGCTGGACAGACTCCCTTAAAGCTCTTGAAACCTGCGAAGAGGTTCCTCTACTAGCAGAAGAGCTTCATATTGTTTCGAGATGCATAAATTCCCT GGCAATGAAAGCTTGCGCAGATCCAAGTTTGTTCAGTTGGCCCATGCAAGGAGGCAGCGACATTAGGAACCCAGATGGCACTGTAATCTGGAATGGAATA CGTACTTCAGCCAAGCCGCATCCTGTGGGTGAGGATTGGTGGTATGAGGATGTTTCCTTCCTTAGATTACCTCTGTACAAAAGGCTAATTCTGGAAGTTG GTTCAAATGGTATGAATCCAGGGAGGGTTGCTGGGGCACTAATGTACTATGCAAAGAAGCATCTCCCTTTGTTGGGCAGGAAATCAAGCATAGAGAGTGG AAACTATGCTGCATCTAGATCAACTATTTCTGCTACGTCTGAATCAGATCAAAGGAGTCTCCTTGAAGAAATAGTGGAATTGTTGCCTGATCAAAAGGGT GTTACTCCAAGTAATTTCCTGCTTAGGCTTCTGCGAACTGCCATGATAATACATGCGAGTCCATCATGCCGACAGAACTTAGAGAAACGGGTTGGAACCC AGTTGGATGAAGCATCTCTTCAAGACCTTCTGATACCAAATTCAGGCTACTCAGTGGAAACCCTTTATGATATCGACTGTGTTCAGCGAATTCTCGATCA TTTCATGCTGATGGATCGTGATGATCCCACATCAAATTACGTCGAACATGAAGGGCAAATAACGGAAAGTTCGCATTCGCTCGTTCCAATAACAATGGTG GCAAATCTGATTGATAGTTATCTAGCAGAGGTAGCATCTGATGTTAATTTGAAGTTAGCGAAGTTTCAGTCTCTTGCTGCTGTAGTCCCTGATTATGCCA GGCCAATAGATGATGGAATTTACCGAGCAATTGATATATATCTTAAGGCTCATCCATGGCTAACAGATTCTGAGAGGGAACAACTTTGCAGGCTCATGAA CTGTCAAAAGTTTTCATTGGAAGCCAGCACTCACGCAGCCCAGAATGAGAGGCTACCTCTTAGAGTCATTGTCCAAGTTTTATTCTTTGAACAACTACGG CTTCGCACCTCTGTTTCTGGCTGGTTCTTTGTCTCTGAAAACCTTGATAACTCACAAAACCTAAGTGGGAATCTTGCTCTTGCGAGAAACGATTTGCATC CTCAAGCAGGAGCCATACATGGCCGCATCATGGTAGATGACATGAAAGAACGAGTTTCCGAGCTTGAGAAAGAGTGTTTGAGCATGAAACAAGAGATTGA GAAGCTGGGAAAAACAAAGGTGTCGAGTTGGAACATCTTGTTAAGAAAGTTTGGTTTTAGTCGATCAAAGTCAAAATACGGGGATCCAGAAGCATCAAAA CCAACGGATACCAAAGAATTACCAACGTCCTCAGCACCACTCATAAATGGAGGAGAAAATCAGAATAATGAATCAGCAGAATGA
AA sequence Show only first row Show all	>Potri.008G038600.1 pacid=42806632 polypeptide=Potri.008G038600.1.p locus=Potri.008G038600 ID=Potri.008G038600.1.v4.1 annot-version=v4.1 MACMKLGSKSEVFHLDGHTWLCSTGLQSDVIIEIGDMSFHLHKFPLLSRSEVLENLIGEHSSEDEKRCVLQLHDVPGGAKTFLLAAKFCYGIKMELTALN VVSLRCAAEYLGMSEDYGEENLITQTENFLNEVFGSWTDSLKALETCEEVPLLAEELHIVSRCINSLAMKACADPSLFSWPMQGGSDIRNPDGTVIWNGI RTSAKPHPVGEDWWYEDVSFLRLPLYKRLILEVGSNGMNPGRVAGALMYYAKKHLPLLGRKSSIESGNYAASRSTISATSESDQRSLLEEIVELLPDQKG VTPSNFLLRLLRTAMIIHASPSCRQNLEKRVGTQLDEASLQDLLIPNSGYSVETLYDIDCVQRILDHFMLMDRDDPTSNYVEHEGQITESSHSLVPITMV ANLIDSYLAEVASDVNLKLAKFQSLAAVVPDYARPIDDGIYRAIDIYLKAHPWLTDSEREQLCRLMNCQKFSLEASTHAAQNERLPLRVIVQVLFFEQLR LRTSVSGWFFVSENLDNSQNLSGNLALARNDLHPQAGAIHGRIMVDDMKERVSELEKECLSMKQEIEKLGKTKVSSWNILLRKFGFSRSKSKYGDPEASK PTDTKELPTSSAPLINGGENQNNESAE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G03250			Phototropic-responsive NPH3 fa...		Potri.008G038600 [exp]	0	1
AT2G38480			Uncharacterised protein family...		Potri.016G128200 [exp]	1.41	0.8320
AT4G37880			LisH/CRA/RING-U-box domains-co...		Potri.015G128600 [exp]	2.00	0.7847
AT4G35140			Transducin/WD40 repeat-like su...		Potri.004G178700 [exp]	7.48	0.7582
					Potri.010G148450 [exp]	7.74	0.7656
AT3G43220			Phosphoinositide phosphatase f...		Potri.018G063700 [exp]	10.95	0.7317
AT1G80650		RTL1	RNAse THREE-like protein 1 (.1...		Potri.003G179700 [exp]	12.16	0.7197
AT5G04390	C2H2ZnF		C2H2-type zinc finger family p...		Potri.010G229400 [exp]	15.68	0.7144
AT1G04200			unknown protein		Potri.010G081800 [exp]	16.49	0.7516
AT1G43890		ATRAB-C1, RAB18...	RAB GTPASE HOMOLOG 18-1, ARABI...		Potri.002G074400 [exp]	19.74	0.7535
AT5G11790		NDL2	N-MYC downregulated-like 2 (.1...		Potri.018G054900 [exp]	20.29	0.7042

Compare expression of checked genes

Potri.008G038600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.