Plant FIBer expression Database

Potri.008G038700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G01720 677 / 0 Ribophorin I (.1)
AT1G76400 468 / 2e-160 Ribophorin I (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G223500
[exp]
858 / 0 AT2G01720 683 / 0.0 Ribophorin I (.1)
Potri.005G255000
[exp]
491 / 7e-170 AT1G76400 816 / 0.0 Ribophorin I (.1)
Potri.002G006600
[exp]
487 / 5e-168 AT1G76400 817 / 0.0 Ribophorin I (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10023524
[exp]
688 / 0 AT2G01720 650 / 0.0 Ribophorin I (.1)
Lus10040410
[exp]
684 / 0 AT2G01720 645 / 0.0 Ribophorin I (.1)
Lus10025159
[exp]
499 / 6e-173 AT1G76400 843 / 0.0 Ribophorin I (.1)
Lus10016038
[exp]
314 / 6e-102 AT1G76400 595 / 0.0 Ribophorin I (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF04597 Ribophorin_I Ribophorin I
Representative CDS sequence
>Potri.008G038700.1 pacid=42807169 polypeptide=Potri.008G038700.1.p locus=Potri.008G038700 ID=Potri.008G038700.1.v4.1 annot-version=v4.1
ATGGCGAGTTCAACATCCATGGAAGCAGCGGGACTCACTCTACCTTTCTTGATCCTCACATTTCTCACAATTTCCGCTGCATCCTCAACTAACCAGATCC
AAATCCTTAACGCTGAACGTAGAATTGACTTGAGTTCACATATTGTTAAGGTCTTCTTGACTTTAAAGGTTGAGAATGTCGGGACAACCCCTGCTTCAGA
AATCGTTCTTGCATTTGCACCTGCTCAAGCTGATCATCTAGCACTTGTCAAAGCACAAGCAGCTATAGGCAAGAAGAAGAAGAAAAGTTATGTTCATCTT
GATGTAAACCCAACAGAGCTACCCGATGCGCCAAATGGAACTAAATATTTCAGTATATCTTTGCTTAATCCGTTAAGTTCAGGTGAAACTGCAACTCTGG
AAGTGCTTTATATATTAACACATTCTCTGGAACCTTTCCCAGCAGAGATAAGCCAATCGGAATCACAATTAGTATATTTCCGTGACAGCGCATTAATACT
GTCACCATATCATGTTAAGCAGCAAACTACTTTTCTTAAGACACCAAGTACAAAAGTGGAATCATTTACAAGAGTGGAACCCACCAAGCTTGCTGGTAGA
GAACTAAAGTATGGACCATATGAAGATCATCCTCCATATTCATTTTCTCCAGTAATTGTTCATCTTGAGAATAACAGCCCATTTGCTGTTGTTGAAGAGC
TTTTAAGAGAAGTAGAGATATCTCACTGGGGCAACCTTCAAATAACAGAGCATTACAAATTGGTCCATGCTGGTGCTCGACACAAAGGCGTGTTTTCCAG
AGTTGAGTATCAATCTAGGCCATCTTTTAGTGGCACATCTTCCTTCAAACACCTTCTAGCAAGTCTACCACCTAGGGTGCACTCTGTGTATTATCGGGAT
GACATTGGAAACATCTCATCATCACATTTACGTTCAGATAACCGTAAGTCGGAACTTGAAATCGAACCACGGTATCCTTTATTTGGAGGTTGGAAGGCTA
CTTTTGTTATTGGATATGGGCTACCACTGGAAGACTTCCTTTTTGAGTCACCTGATGGCAAGCGTTACCTCAACTTCAGCTTCGGCTGTCCTCTTGCAGA
GACTGTTGTGGACAAGTTGACCATCAAAGTTGTGCTACCAGAGGGATCAAAAGACCCTTCAGCTGTTGTTCCTTTTCCAGTGGAGCAGCGTCTAGAGACC
AAATATTCATACCTTGATGTTGTTGGGAGGACCGTTCTGGTTCTGGAGAATAAAAATGTAGTTCCTGAGCACATTACTCCTTTCCAGGTTTACTACACTT
TCAAACCTATATTTATGCTAGCAGAACCATTGATGTTGGCATCTGTATTTTTCTTGTTTTTCATGGCTTGTTTAGCTTATCTACACATTGATCTTTCCAT
ACGCAAGTAA
AA sequence
>Potri.008G038700.1 pacid=42807169 polypeptide=Potri.008G038700.1.p locus=Potri.008G038700 ID=Potri.008G038700.1.v4.1 annot-version=v4.1
MASSTSMEAAGLTLPFLILTFLTISAASSTNQIQILNAERRIDLSSHIVKVFLTLKVENVGTTPASEIVLAFAPAQADHLALVKAQAAIGKKKKKSYVHL
DVNPTELPDAPNGTKYFSISLLNPLSSGETATLEVLYILTHSLEPFPAEISQSESQLVYFRDSALILSPYHVKQQTTFLKTPSTKVESFTRVEPTKLAGR
ELKYGPYEDHPPYSFSPVIVHLENNSPFAVVEELLREVEISHWGNLQITEHYKLVHAGARHKGVFSRVEYQSRPSFSGTSSFKHLLASLPPRVHSVYYRD
DIGNISSSHLRSDNRKSELEIEPRYPLFGGWKATFVIGYGLPLEDFLFESPDGKRYLNFSFGCPLAETVVDKLTIKVVLPEGSKDPSAVVPFPVEQRLET
KYSYLDVVGRTVLVLENKNVVPEHITPFQVYYTFKPIFMLAEPLMLASVFFLFFMACLAYLHIDLSIRK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G01720 Ribophorin I (.1) Potri.008G038700
[exp]
0 1
AT2G24765 ARF3, ARL1, ATA... ARF-LIKE 1, ADP-ribosylation f... Potri.006G267800
[exp]
5.56 0.7758 ARF1.8
AT1G68000 ATPIS1 phosphatidylinositol synthase ... Potri.004G175600
[exp]
10.39 0.8038
AT4G26550 Got1/Sft2-like vescicle transp... Potri.014G170700
[exp]
12.24 0.8187
AT1G04190 TPR3 tetratricopeptide repeat 3, Te... Potri.008G156500
[exp]
13.85 0.7540
AT3G55280 RPL23A2, RPL23A... RIBOSOMAL PROTEIN L23A2, ribos... Potri.006G213300
[exp]
14.76 0.8337
AT5G23200 unknown protein Potri.005G092000
[exp]
17.60 0.8024
AT1G55150 DEA(D/H)-box RNA helicase fami... Potri.013G158000
[exp]
26.45 0.7259 Pt-P68.2
AT3G10260 Reticulon family protein (.1.2... Potri.005G206800
[exp]
30.59 0.7482
AT5G52840 NADH-ubiquinone oxidoreductase... Potri.017G149100
[exp]
32.74 0.8051
AT1G52630 O-fucosyltransferase family pr... Potri.001G171500
[exp]
33.94 0.7862

Potri.008G038700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.