Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54800 922 / 0 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1), Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.2) AT2G28320 898 / 0 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1) AT4G19040 351 / 2e-110 EDR2 ENHANCED DISEASE RESISTANCE 2 (.1.2.3) AT5G45560 339 / 7e-106 Pleckstrin homology (PH) domain-containing protein / lipid-binding START domain-containing protein (.1) AT5G35180 199 / 6e-54 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2), Protein of unknown function (DUF1336) (.3), Protein of unknown function (DUF1336) (.4) AT5G10750 181 / 2e-51 Protein of unknown function (DUF1336) (.1) AT1G06050 176 / 1e-49 Protein of unknown function (DUF1336) (.1) AT5G24990 164 / 2e-45 Protein of unknown function (DUF1336) (.1) AT5G25010 158 / 3e-43 Protein of unknown function (DUF1336) (.1) AT5G25020 120 / 2e-30 Protein of unknown function (DUF1336) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G223400 [exp] 1262 / 0 AT3G54800 922 / 0.0 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1), Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.2) Potri.009G011200 [exp] 937 / 0 AT2G28320 1071 / 0.0 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1) Potri.018G113100 [exp] 266 / 4e-78 AT5G35180 1028 / 0.0 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2), Protein of unknown function (DUF1336) (.3), Protein of unknown function (DUF1336) (.4) Potri.018G014234 [exp] 192 / 4e-55 AT5G10750 428 / 5e-152 Protein of unknown function (DUF1336) (.1) Potri.001G132900 [exp] 201 / 7e-55 AT4G19040 1159 / 0.0 ENHANCED DISEASE RESISTANCE 2 (.1.2.3) Potri.003G100600 [exp] 199 / 2e-54 AT4G19040 1182 / 0.0 ENHANCED DISEASE RESISTANCE 2 (.1.2.3) Potri.008G213000 [exp] 193 / 4e-52 AT4G19040 1017 / 0.0 ENHANCED DISEASE RESISTANCE 2 (.1.2.3) Potri.007G130400 [exp] 167 / 2e-46 AT1G06050 390 / 1e-136 Protein of unknown function (DUF1336) (.1) Potri.017G027700 [exp] 163 / 1e-44 AT1G06050 399 / 4e-140 Protein of unknown function (DUF1336) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040406 [exp] 974 / 0 AT2G28320 922 / 0.0 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1) Lus10023522 [exp] 929 / 0 AT2G28320 883 / 0.0 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1) Lus10021465 [exp] 870 / 0 AT2G28320 1056 / 0.0 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1) Lus10016094 [exp] 793 / 0 AT2G28320 979 / 0.0 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1) Lus10007596 [exp] 341 / 3e-106 AT4G19040 1217 / 0.0 ENHANCED DISEASE RESISTANCE 2 (.1.2.3) Lus10012149 [exp] 338 / 3e-105 AT4G19040 1227 / 0.0 ENHANCED DISEASE RESISTANCE 2 (.1.2.3) Lus10040015 [exp] 271 / 5e-80 AT5G35180 1034 / 0.0 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2), Protein of unknown function (DUF1336) (.3), Protein of unknown function (DUF1336) (.4) Lus10040011 [exp] 210 / 8e-58 AT5G35180 820 / 0.0 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2), Protein of unknown function (DUF1336) (.3), Protein of unknown function (DUF1336) (.4) Lus10019591 [exp] 207 / 3e-57 AT5G35180 931 / 0.0 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2), Protein of unknown function (DUF1336) (.3), Protein of unknown function (DUF1336) (.4) Lus10019068 [exp] 201 / 7e-56 AT5G35180 589 / 0.0 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2), Protein of unknown function (DUF1336) (.3), Protein of unknown function (DUF1336) (.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0266 [poplar] [flax] PH PF00169 [poplar] [flax] PH PH domain CL0209 [poplar] [flax] Bet_v_1_like PF01852 [poplar] [flax] START START domain CL0209 [poplar] [flax] PF07059 [poplar] [flax] DUF1336 Protein of unknown function (DUF1336)
Representative CDS sequence Show only first row Show all	>Potri.008G038800.4 pacid=42806623 polypeptide=Potri.008G038800.4.p locus=Potri.008G038800 ID=Potri.008G038800.4.v4.1 annot-version=v4.1 ATGGGTGTGCCTCCAAATGATGGCAAAATGGAAGGGTGGTTGTTTATCATCAGGTCCCATAGGTTTGGTTTACAGTTTTCACGCAGAAGGTACTTCATTC TTCAAGAAAACTACCTCAGATGCTATAAGACAAAGCCCATTTCACAGGAAGAGGAGCCACTTAGAAGTGCAAAAATAGACTCCTACATTCGCATCACAGA TAACGGAAGAGAAAGCATCAATCGGAAAGTCTTCTTCATTTTCGCGCTTTACAATATTTTAAACGAAAATGATCATCTTAAGTTGGGAGCAAGTGGTTCA GAAGATGCAGGAAGATGGATTCGTTCCTTGCAGAATGCTGTCTTGAAGGAGTGCCCAAATCCAGAAAAGGAGTTCATGTCTTTTTCTAAGAAGAACTGGC TACCTTCAAGATTTGGCAGTGCAAAGAGGGCTCAGCGCCAAAGATCCATAGATTATTACTCCTTCTTGCATAATGAGGCAGTGACATCTGATGTAATTGC GCCGTCACCATGGAAAATATTTGGTTGTCAGAATGGATTGCGTCTCTTCAAAGAAGCAAAAGATTGGGATTCTCGTGGGAGGCATTGGGATGATCACCCA GCTATAATGGCAGTTGGTGTGCTTAATGGGACTCCAGAAGCCATTTTCCATACTCTTATGTCTCTTGGTGCCTCGAGATCAGAATGGGACTTCTGTTTTT ACCGAGGCAGTGTGGTTGAGCACCTTGATGGTCACACAGATATTCTTCACGCGAAGTTATACAGCAATTGGTTACCCTGGGGGATGATGCGTAGAGATTT TTTGTTGCGACGATATTGGAGAAGAGAGGAAGATGGAACATATGTAATTCTATACCATTCTGTGATTCACAAGAAGTGTCCTCCACAAAATGGATATGTT CGAGCTTGCCTTAAAAGTGGAGGGTACGTAATAACTCCTGTGAATAAAGGAAGGGAATCACTTGTAAAACACATGCTTGCAGTTAATTGGAAGTTTTGGA AAGTATATTTGCGTCAACCATCTGGAAGATCTATAACCATCCGCATGCTTGAAAGACTTGCGGCACTGAGGGAGATGTTCCAAGCCAAAGCCGGCAATTA TCCATCTGATTTCTCTTCTGCGGACTCGGAAGTAAAAATAATGTTGCCCCAGGATGAAGTGGAGGATATTAAATCGGAAGATAAAAGCCAACAGAAGTTC GAACTGAATGCTGATTTAGAGGAAGACGAGGCAGAAAAAACAACTTCAGGGCGCAGAAGTTTAATGAGCCTGAATGATGCCTCTGATGAATTCTTTGATG TTCCTGATTCTGGTGAAGTGATAGCTTTTGACCATTTGGAGAATGGCTGGTTTCCTGAAGTGAGTCAAGAATGGCCTGCTTCGAACATGTCCCAGCCCAG ATTATCATCTGCGGCTGTCTTTGTGAAGAAATTACATGACCTTGCAGTTCAGAAGAAGGGTTACATGGACTTTCAAGAGTTGGCTAAAGAAGAAAACGTA GCGACATCCTTTGGAAATACTCTTCAAAAGGACTCAGCCTGTTCTTTACCATGCAGTTGGGCTACTGCTGATCCTACTACCTTTCTGATTCGTGGAGAAA ATTATTTCAAAGACAATCTGAAGATCAAGGCAACAGGTACATTAATGCAAATGGTTGGTGCCGACTGGCTAAGATCCGACCGCCGAGAAGATGATCTTGG AAGCCGTGCTGAGAGTATTGTTCAGAAGTTTGCAGCACAAGGTCGACCAGAATTCTTCTTCATTGTCAATATACAGGTTCCCGGTGTAACCCAGCATACC CTTGCACTGTATTATATGTTAAAAACTCCTCTGGAAGAAACTCCCTTGCTCCACAGTTTTGTCAATGGTGATGATGCCTTTAGGAATTCAAGATTTAAGC TCATACCTTATATTTCTAAGGGATCATGGATAGTCAAGCAGAGTGTTGGTAAGAAAGCTTGCTTAGTGGGTCAAGCACTTGAAATGAATTACTTTCGAGG GAAGAACTACTTGGAGCTCGACATTGATGTCGGATCTTCCACTGTAGCCAGAGGGGTGGTCAGCCTTGTTCTTGGATACCTGAACCATCTGGTCATAGAA ATGGCATTTGTGATTCAGGGTAACACCGAGGAGGAGCTCCCAGAAGTCCTACTCGGAACCTGTCGACTCAATAATCTGGATGCATCCAAATCAGTCCTTG TATAG
AA sequence Show only first row Show all	>Potri.008G038800.4 pacid=42806623 polypeptide=Potri.008G038800.4.p locus=Potri.008G038800 ID=Potri.008G038800.4.v4.1 annot-version=v4.1 MGVPPNDGKMEGWLFIIRSHRFGLQFSRRRYFILQENYLRCYKTKPISQEEEPLRSAKIDSYIRITDNGRESINRKVFFIFALYNILNENDHLKLGASGS EDAGRWIRSLQNAVLKECPNPEKEFMSFSKKNWLPSRFGSAKRAQRQRSIDYYSFLHNEAVTSDVIAPSPWKIFGCQNGLRLFKEAKDWDSRGRHWDDHP AIMAVGVLNGTPEAIFHTLMSLGASRSEWDFCFYRGSVVEHLDGHTDILHAKLYSNWLPWGMMRRDFLLRRYWRREEDGTYVILYHSVIHKKCPPQNGYV RACLKSGGYVITPVNKGRESLVKHMLAVNWKFWKVYLRQPSGRSITIRMLERLAALREMFQAKAGNYPSDFSSADSEVKIMLPQDEVEDIKSEDKSQQKF ELNADLEEDEAEKTTSGRRSLMSLNDASDEFFDVPDSGEVIAFDHLENGWFPEVSQEWPASNMSQPRLSSAAVFVKKLHDLAVQKKGYMDFQELAKEENV ATSFGNTLQKDSACSLPCSWATADPTTFLIRGENYFKDNLKIKATGTLMQMVGADWLRSDRREDDLGSRAESIVQKFAAQGRPEFFFIVNIQVPGVTQHT LALYYMLKTPLEETPLLHSFVNGDDAFRNSRFKLIPYISKGSWIVKQSVGKKACLVGQALEMNYFRGKNYLELDIDVGSSTVARGVVSLVLGYLNHLVIE MAFVIQGNTEEELPEVLLGTCRLNNLDASKSVLV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G54800			Pleckstrin homology (PH) and l...		Potri.008G038800 [exp]	0	1
AT1G26810		GALT1	galactosyltransferase1 (.1)		Potri.008G086900 [exp]	1.00	0.8341
AT5G60690	HD	IFL1, REV	REVOLUTA, INTERFASCICULAR FIBE...		Potri.009G014500 [exp]	3.00	0.8038	Pt-HB1.8
AT1G69420			DHHC-type zinc finger family p...		Potri.010G163200 [exp]	6.32	0.7698
					Potri.010G144000 [exp]	6.63	0.7212
AT5G42340		PUB15	Plant U-Box 15 (.1)		Potri.001G012300 [exp]	11.83	0.7369
AT2G35630		GEM1, MOR1	MICROTUBULE ORGANIZATION 1, AR...		Potri.011G153700 [exp]	13.85	0.8172	Pt-MOR1.1
AT1G76270			O-fucosyltransferase family pr...		Potri.009G143100 [exp]	18.70	0.7284
AT4G10550			Subtilase family protein (.1.2...		Potri.001G455800 [exp]	21.79	0.7385
AT1G76620			Protein of unknown function, D...		Potri.002G001900 [exp]	25.41	0.7481
AT5G20490		XI-17, ATXIK, X...	MYOSIN XI-17, MYOSIN XI K, Myo...		Potri.006G145700 [exp]	32.98	0.7902

Compare expression of checked genes

Potri.008G038800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.