Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54810 150 / 2e-42 GATA GATA8, BME3, BME3-ZF GATA TRANSCRIPTION FACTOR 8, BLUE MICROPYLAR END 3-ZINC FINGER, BLUE MICROPYLAR END 3, Plant-specific GATA-type zinc finger transcription factor family protein (.1.2) AT1G08010 137 / 6e-38 GATA GATA11 GATA transcription factor 11 (.1.2) AT4G32890 129 / 1e-34 GATA GATA9 GATA transcription factor 9 (.1) AT1G08000 129 / 2e-34 GATA GATA10 GATA transcription factor 10 (.1.2) AT5G25830 127 / 1e-33 GATA GATA12 GATA transcription factor 12 (.1) AT5G66320 125 / 9e-33 GATA GATA5 GATA transcription factor 5 (.1.2) AT3G24050 122 / 2e-32 GATA GATA1 GATA transcription factor 1 (.1) AT3G60530 120 / 4e-32 GATA GATA4 GATA transcription factor 4 (.1) AT3G51080 121 / 1e-31 GATA GATA6 GATA transcription factor 6 (.1) AT4G36240 118 / 2e-31 GATA GATA7 GATA transcription factor 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G223300 [exp] 573 / 0 AT3G54810 148 / 8e-42 GATA TRANSCRIPTION FACTOR 8, BLUE MICROPYLAR END 3-ZINC FINGER, BLUE MICROPYLAR END 3, Plant-specific GATA-type zinc finger transcription factor family protein (.1.2) Potri.006G237700 [exp] 162 / 1e-46 AT5G25830 246 / 2e-79 GATA transcription factor 12 (.1) Potri.018G044900 [exp] 160 / 1e-45 AT5G25830 247 / 2e-79 GATA transcription factor 12 (.1) Potri.004G211800 [exp] 137 / 1e-37 AT1G08010 150 / 4e-43 GATA transcription factor 11 (.1.2) Potri.013G059600 [exp] 129 / 1e-34 AT5G25830 128 / 1e-34 GATA transcription factor 12 (.1) Potri.019G033000 [exp] 127 / 6e-34 AT4G32890 127 / 2e-34 GATA transcription factor 9 (.1) Potri.001G188500 [exp] 126 / 1e-33 AT4G32890 201 / 7e-63 GATA transcription factor 9 (.1) Potri.014G058600 [exp] 125 / 1e-33 AT3G60530 189 / 7e-60 GATA transcription factor 4 (.1) Potri.002G142800 [exp] 123 / 5e-33 AT3G60530 189 / 1e-59 GATA transcription factor 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009227 [exp] 311 / 7e-104 AT3G54810 162 / 8e-47 GATA TRANSCRIPTION FACTOR 8, BLUE MICROPYLAR END 3-ZINC FINGER, BLUE MICROPYLAR END 3, Plant-specific GATA-type zinc finger transcription factor family protein (.1.2) Lus10037994 [exp] 305 / 9e-102 AT3G54810 160 / 6e-46 GATA TRANSCRIPTION FACTOR 8, BLUE MICROPYLAR END 3-ZINC FINGER, BLUE MICROPYLAR END 3, Plant-specific GATA-type zinc finger transcription factor family protein (.1.2) Lus10011430 [exp] 131 / 2e-35 AT4G32890 237 / 9e-77 GATA transcription factor 9 (.1) Lus10037572 [exp] 130 / 3e-35 AT4G32890 236 / 2e-76 GATA transcription factor 9 (.1) Lus10021466 [exp] 129 / 5e-35 AT1G08010 157 / 2e-46 GATA transcription factor 11 (.1.2) Lus10016092 [exp] 129 / 6e-35 AT1G08010 159 / 2e-47 GATA transcription factor 11 (.1.2) Lus10028178 [exp] 129 / 7e-35 AT2G45050 204 / 3e-65 GATA transcription factor 2 (.1) Lus10037398 [exp] 129 / 1e-34 AT1G08010 169 / 1e-50 GATA transcription factor 11 (.1.2) Lus10031096 [exp] 120 / 1e-33 AT5G66320 137 / 1e-40 GATA transcription factor 5 (.1.2) Lus10025829 [exp] 126 / 2e-33 AT4G32890 221 / 2e-70 GATA transcription factor 9 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0167 [poplar] [flax] Zn_Beta_Ribbon PF00320 [poplar] [flax] GATA GATA zinc finger
Representative CDS sequence Show only first row Show all	>Potri.008G038900.2 pacid=42808254 polypeptide=Potri.008G038900.2.p locus=Potri.008G038900 ID=Potri.008G038900.2.v4.1 annot-version=v4.1 ATGATTGGACAGACAAATACTACTAGTAATTTCATGGACGAGATAGATTGTGGAAGCTTTTTCGAGCACATCGACGACCTCCTCGAATTCCCTTCTGATG ATGTCGACGCTACTTTACCTGACTGCACCACCACAAACAACCATACCAGTTGTTTCATGAACAACGATGATAACTCGTTTCCTGGTATTTGGTCGACTCA GTCCGACTCGCTCCCGGGTTCTGCCTCTGACCTATCTGCCGAGTTGTCCGTTCCTTATGAAGATATTGTTCAGCTGGAATGGCTATCAAACTTTGTGGAG GATTCCTTCTCTGGAGGAAGCCTGACGATGAAGAAAGAGGAGTCCACAATCGTCAACAACAAGGAATCGCCGCCACATCACCAGTACCAGTTCCAGACTT CCAGCCCAGTTTCTGTCCTTGAGAGCAGTAGCTCCTGCTCAGGAGAGAAAACTGCACCGCGTAGCCCTGAAGTTGGTGCTTCTGGCAAACGTGGGCGTGC TCGTAGCAAGCGTCCTCGCCCTGCTACATTCACTCCTCGTCCAGCAATGCAACTCATTTCGCCCACTTCGTCAATCACTGAGGTTCCCCAGCCATTCGTT CCACCTAAGATCGCTTTGGACTCTGAGAACTTTGCTGAGTCCAGACTTGTGATCAAGATACCGAACCATGTTGACCCAGAACATAAGAAGAAGAAGAAAA TTAAGTTTACTGTTCCGTTAGGTCCCGTGGAGATGAACCAAAACTCATCACCACAGCAAGCAGTGAGAAAATGCATGCATTGTGAGATAACCAAGACACC ACAATGGAGAGCAGGGCCAATGGGACCAAAAACCCTTTGCAATGCTTGTGGTGTTCGCTACAAGTCAGGTCGGCTTTTCCCCGAGTACCGGCCCGCGGCT AGTCCAACCTTCGTTCCTTCCCTGCATTCCAATTCCCATAAGAAAGTTGTTGAGATGAGAGCAAAGTCTGGGGAGAAAATTACTGTCAGCAGACCTGCTG CAATGGTGGCCAACCCGCCGGAGTTGATTCCTAATAAGAGCAACCCTGCAATGGATTACATATAA
AA sequence Show only first row Show all	>Potri.008G038900.2 pacid=42808254 polypeptide=Potri.008G038900.2.p locus=Potri.008G038900 ID=Potri.008G038900.2.v4.1 annot-version=v4.1 MIGQTNTTSNFMDEIDCGSFFEHIDDLLEFPSDDVDATLPDCTTTNNHTSCFMNNDDNSFPGIWSTQSDSLPGSASDLSAELSVPYEDIVQLEWLSNFVE DSFSGGSLTMKKEESTIVNNKESPPHHQYQFQTSSPVSVLESSSSCSGEKTAPRSPEVGASGKRGRARSKRPRPATFTPRPAMQLISPTSSITEVPQPFV PPKIALDSENFAESRLVIKIPNHVDPEHKKKKKIKFTVPLGPVEMNQNSSPQQAVRKCMHCEITKTPQWRAGPMGPKTLCNACGVRYKSGRLFPEYRPAA SPTFVPSLHSNSHKKVVEMRAKSGEKITVSRPAAMVANPPELIPNKSNPAMDYI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G54810	GATA	GATA8, BME3, BM...	GATA TRANSCRIPTION FACTOR 8, B...		Potri.008G038900 [exp]	0	1
AT3G24550		ATPERK1	proline-rich extensin-like rec...		Potri.018G081300 [exp]	2.82	0.8843
AT2G22125		POM2, CSI1	POM-POM 2, cellulose synthase-...		Potri.007G087200 [exp]	4.69	0.9042
AT3G54810	GATA	GATA8, BME3, BM...	GATA TRANSCRIPTION FACTOR 8, B...		Potri.010G223300 [exp]	6.48	0.8511
AT2G25800			Protein of unknown function (D...		Potri.006G238200 [exp]	6.48	0.8761
AT3G25140		QUA1, GAUT8	QUASIMODO 1, GALACTURONOSYLTRA...		Potri.002G246500 [exp]	15.09	0.8739
AT1G76660			unknown protein		Potri.002G001100 [exp]	20.34	0.8755
AT5G10840			Endomembrane protein 70 protei...		Potri.018G018400 [exp]	20.63	0.8850
AT3G15940			UDP-Glycosyltransferase superf...		Potri.001G179000 [exp]	23.23	0.8363
AT2G35190		NSPN11, ATNPSN1...	novel plant snare 11 (.1)		Potri.003G085200 [exp]	24.49	0.8877	Pt-NPSN11.1
AT1G21660			Chaperone DnaJ-domain superfam...		Potri.002G079200 [exp]	26.49	0.8422

Compare expression of checked genes

Potri.008G038900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.