Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17530 872 / 0 phosphoglucosamine mutase family protein (.1.2.3) AT1G70820 375 / 3e-122 phosphoglucomutase, putative / glucose phosphomutase, putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G223000 [exp] 1055 / 0 AT5G17530 865 / 0.0 phosphoglucosamine mutase family protein (.1.2.3) Potri.008G131400 [exp] 375 / 1e-122 AT1G70820 964 / 0.0 phosphoglucomutase, putative / glucose phosphomutase, putative (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023518 [exp] 881 / 0 AT5G17530 896 / 0.0 phosphoglucosamine mutase family protein (.1.2.3) Lus10040402 [exp] 795 / 0 AT5G17530 778 / 0.0 phosphoglucosamine mutase family protein (.1.2.3) Lus10015835 [exp] 368 / 1e-119 AT1G70820 901 / 0.0 phosphoglucomutase, putative / glucose phosphomutase, putative (.1) Lus10009327 [exp] 183 / 9e-53 AT1G70820 478 / 3e-167 phosphoglucomutase, putative / glucose phosphomutase, putative (.1) Lus10020414 [exp] 130 / 7e-34 AT1G70820 344 / 2e-115 phosphoglucomutase, putative / glucose phosphomutase, putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02878 [poplar] [flax] PGM_PMM_I Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PF02879 [poplar] [flax] PGM_PMM_II Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PF02880 [poplar] [flax] PGM_PMM_III Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
Representative CDS sequence Show only first row Show all	>Potri.008G039200.1 pacid=42806943 polypeptide=Potri.008G039200.1.p locus=Potri.008G039200 ID=Potri.008G039200.1.v4.1 annot-version=v4.1 ATGGCAGCAGTGTGCGAGAAGATTGTTGAAAATGTAATTGTAGCAAAGAATAGGGTGTTGACGACAAATCAATACAACCAAAGGGACTGTTGTTCTGCGG CGGCCCCTTATAACCACCGCAACTTCCTTTCCTTCCACGGAGGGAAAAAGTTATTACCAAAATACCACTGTGGTTTCGTTAGCCGTCGAAATATTTACTG CAATGCTGCTCCGTCGACGACTGCGGTGCCATATCTGGAGAAGGTGGATTTTATGAAGCTTCAGAATGGAAGTGATATTCGAGGTGTGGCTGTTGCTGGC GTTGAGGGAGAACCTGTTACCCTCACTGAACCAGTTACAGAAGCAATAGCAGCAGCCTTTTCCGCGTGGTTACTGGAAATGAAGAGGGCTGATGCATCCA AACCTTTGAGAGTGTCTGTTGGCCATGATTCCCGCATATCTGCACAGGTGTTGCAGGATGCAGTTTCTCAAGGTATTGCTGGTGCAGGCCTGGATGTTGT TCAATATGGACTGGCATCTACCCCTGCAATGTTTAATAGCACACTAACTGAAGATGAAGCTTTTTTATGTCCTGTTGATGGGGCTATAATGATAACAGCT AGTCATCTTCCTTACAACAGAAATGGGTTCAAATTCTTCACAAATGCTGGTGGGCTTGGGAAGGCTGATATCAAAATCATTCTAGAGCGTGCTGCAGACA TTTATAAGAGCTTCACAGATCAAGGTTTAATGAAGTCAAAACGGAAAGCTTCTGAATCCATAAAAAGAGTTGATTACATGACTGTGTATACATCTGATCT TGTGAAGGCAGTCCGCAAAGCTGCAGAAAATATAGAGAAGCCATTGGAGGGATTCCATATTGTTGTTGATGCTGGAAATGGAGCAGGAGGATTTTTTGCT GAAAAAGTTCTTCAGCCTCTAGGAGCTATCACCTCTGGCAGCCAGTTTTTGGAACCAGATGGTATGTTTCCAAATCATATTCCCAATCCAGAGGACAAGA CAGCAATGAAGGCTATCACCCAGGCAGTCCTTGAGAACAAGGCCGATTTGGGGATCATATTTGATACTGATGTTGACAGATCTGCTGCTGTTGATTCCAT TGGTCGTGAGTTCAACCGGAATCGTTTGATTGCCTTGATGTCTGCCATTGTTCTAGAGGAACATCCGGGAACAACCATTGTTACAGACAGTGTGACTTCA GATGGCCTGACAACGTTTATTGAAAAGAAACTCGGGGGAAAGCACCATCGGTTCAAAAGAGGCTATAAAAATGTCATTGATGAGGCTGTTCGTCTGAACT CTGTTGGTGAGGAATCACATCTGGCCATTGAAACCAGTGGCCATGGAGCTCTGAGAGAAAACCACTGGCTTGATGATGGAGCATACCTCATGGTTAAAGT TTTAAATAAACTGGCTTCAGCTAGAGCTTCTGGAATTGCTGGCGGCAGCAAAGTTTTGACTGATCTGGTAGAGGGTCTGCAGGAACCAGGAGTAGCTGTG GAATTGAGATTGAAAATCGATCAGAACCATCCAGATCTTAAAGGAGGATCTTTCCGAGAATATGGAGAGGCAGTGCTGCAACTTTTGGAGAATCATATAG AGTCAGATCCAAAGCTTCAGAAAGCTCCTGTTAACTATGAAGGGGTTCGAGCTTCTGGTTTTGGTGGGTGGTTCCTTCTTAGACTCTCACTTCATGATCC CGTTCTTCCCCTTAACATCGAGGCAACTAACCATGAAGATGCTGTGAAACTTGGACTCGCTGTCTCCTCTGCTGTCAAGGAATTCCATGCATTGGATACG TCTGCCTTGGATAAGTTTATCCAAACATAA
AA sequence Show only first row Show all	>Potri.008G039200.1 pacid=42806943 polypeptide=Potri.008G039200.1.p locus=Potri.008G039200 ID=Potri.008G039200.1.v4.1 annot-version=v4.1 MAAVCEKIVENVIVAKNRVLTTNQYNQRDCCSAAAPYNHRNFLSFHGGKKLLPKYHCGFVSRRNIYCNAAPSTTAVPYLEKVDFMKLQNGSDIRGVAVAG VEGEPVTLTEPVTEAIAAAFSAWLLEMKRADASKPLRVSVGHDSRISAQVLQDAVSQGIAGAGLDVVQYGLASTPAMFNSTLTEDEAFLCPVDGAIMITA SHLPYNRNGFKFFTNAGGLGKADIKIILERAADIYKSFTDQGLMKSKRKASESIKRVDYMTVYTSDLVKAVRKAAENIEKPLEGFHIVVDAGNGAGGFFA EKVLQPLGAITSGSQFLEPDGMFPNHIPNPEDKTAMKAITQAVLENKADLGIIFDTDVDRSAAVDSIGREFNRNRLIALMSAIVLEEHPGTTIVTDSVTS DGLTTFIEKKLGGKHHRFKRGYKNVIDEAVRLNSVGEESHLAIETSGHGALRENHWLDDGAYLMVKVLNKLASARASGIAGGSKVLTDLVEGLQEPGVAV ELRLKIDQNHPDLKGGSFREYGEAVLQLLENHIESDPKLQKAPVNYEGVRASGFGGWFLLRLSLHDPVLPLNIEATNHEDAVKLGLAVSSAVKEFHALDT SALDKFIQT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G17530			phosphoglucosamine mutase fami...		Potri.008G039200 [exp]	0	1
AT1G12840		ATVHA-C, DET3	DE-ETIOLATED 3, ARABIDOPSIS TH...		Potri.001G322500 [exp]	2.23	0.9127	Pt-DET3.1
AT3G09800			SNARE-like superfamily protein...		Potri.001G197200 [exp]	12.96	0.9092
AT5G47730			Sec14p-like phosphatidylinosit...		Potri.006G004000 [exp]	14.79	0.9036	Pt-SSH1.2
AT2G45140		PVA12	plant VAP homolog 12 (.1)		Potri.001G152000 [exp]	16.97	0.9014
AT1G35780			unknown protein		Potri.005G165500 [exp]	18.33	0.8849
AT1G30450		HAP5, ATCCC1, C...	HAPLESS 5, cation-chloride co-...		Potri.011G090900 [exp]	18.43	0.9008
AT4G02580			NADH-ubiquinone oxidoreductase...		Potri.005G218000 [exp]	18.97	0.9006
AT1G47128		RD21A, RD21	RESPONSIVE TO DEHYDRATION 21A,...		Potri.001G302100 [exp]	19.28	0.8733
AT4G31080			Protein of unknown function (D...		Potri.006G281200 [exp]	25.45	0.8778
AT2G38130		ATMAK3	Acyl-CoA N-acyltransferases (N...		Potri.011G139300 [exp]	25.92	0.8731	ATMAK3.5

Compare expression of checked genes

Potri.008G039200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.