Plant FIBer expression Database

Potri.008G039400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G20660 1082 / 0 Zn-dependent exopeptidases superfamily protein (.1.2)
AT1G67420 177 / 1e-45 Zn-dependent exopeptidases superfamily protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G175400
[exp]
182 / 2e-47 AT1G67420 1062 / 0.0 Zn-dependent exopeptidases superfamily protein (.1.2)
Potri.010G060500
[exp]
173 / 2e-44 AT1G67420 1085 / 0.0 Zn-dependent exopeptidases superfamily protein (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10037997
[exp]
1264 / 0 AT5G20660 1157 / 0.0 Zn-dependent exopeptidases superfamily protein (.1.2)
Lus10009230
[exp]
1261 / 0 AT5G20660 1154 / 0.0 Zn-dependent exopeptidases superfamily protein (.1.2)
Lus10037015
[exp]
179 / 4e-46 AT1G67420 1104 / 0.0 Zn-dependent exopeptidases superfamily protein (.1.2)
Lus10015792
[exp]
127 / 8e-30 AT1G67420 511 / 2e-168 Zn-dependent exopeptidases superfamily protein (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0035 Peptidase_MH PF04389 Peptidase_M28 Peptidase family M28
Representative CDS sequence
>Potri.008G039400.3 pacid=42808690 polypeptide=Potri.008G039400.3.p locus=Potri.008G039400 ID=Potri.008G039400.3.v4.1 annot-version=v4.1
ATGCGAAAACGACCGGAAACTTCTCGCTCTTCGAACTCACAGCAACGACCGCCCAAACAACCACCATATGCGAATAGCACAACCAATCTGAGTTCATCAA
TGAAATCAATACGGTCAGGATCTGTATGGATAATCTTATCCGCAGTCATAATTTACTCGTGTTATTCCGTTCACTATTACCAGTTCGAAAATCTGCCTTC
ACCTTTAACCGCTGAACAAGCCGGTAAAAGAGGTTTCTCTGAAATCCAAGCCATCAAACACGTCAAAGCATTGACAGATTTCGGTCCTCATCCCGTCGGC
TCTGATTCTCTCGACCTCGCTTTGCAGTATGTTTTGGCGGAAGTGGAGAATATAAAGAAAAACGCGTACTATGAAGTGGATGTTGAGGTGGATTTTTTTC
ACGCGAAAACCGGAGCGAATCGGTTAACTAGTGGATTATTTAGGGGCAAAACTCTTGTTTATGCCGATCTTAAACATGTTGTTTTAAGAATTTTGCCCAA
ATTTACTCCAAATCAAGCTGCTGATAATACTATTCTTGTGTCTTCTCACATTGATACCGTTTTCTCCACGGGAGGGGCTGGAGATTGCAGTTCATGTGTA
GCTGTGATGTTGGAACTTGCTCGAGGGATTTCGCAGTGGGCGCATGGGTTTAAAAATGGTGTGATATTTTTGTTTAATACTGGGGAAGAGGAGGGTTTGA
GCGGGGCTCATAGCTTTATCACTCAGCATCCATGGAGTAAGACTATTCGTTTGGCTGTTGATTTGGAGGCTATGGGTGTAGGAGGAAAGTCTGGCATATT
TCAGGCCGGACCTCATCCATGGGCCATTGAAAACTTTGCGTCGGCAGCGAAATACCCATCTGGGAATATCATAGCGCAGGATCTGTTTTCTGCTGGAGTC
ATCAAATCTGCGACAGATTTCCAAGTATACAAAGAGGTTGCTGGTCTTTCAGGGCTTGACTTTGCTTTCACGGATAATGGTGCAGTTTATCACACTAAGA
ATGACAAATTAGATCTCTTGAAGTCTGGATCTCTCCAGCATCTTGGAGAAAATATGCTTGCTTTTCTGCTTCGGATTGCTTCATCCCCTCATCTTCCAAA
AAGCAAGGACATGGACAAAGAGCTAAAAACTGGCCATGACACTGCTATATTTTTTGATATTTTGGGGACATATATGATTGTGTACAGTCAACGTTTTGCA
AGCATGCTTCATAACTCAGTGATACTGCAATCACTTCTAATATGGGCGGCGTCATTGTTTATGGGTGGTTCTTCAGCGACCATTTCATTGGGCTTGTCAT
GCTTGAGTGCTATCCTGATGTTGTTATTTTCAATAAGTTTCTCTGTTTTTGCGGCCTTCATTGTACCGCAAATATCTCCATCACCAGTGCCCTATGTTGC
AAACCCATTGCTGGTGCTTGGGCTATTTGCTGCACCTGCACTCCTTGGGGCTTTGACGGGTCAACATTTGGGTTATCTTATTCTGAAGAAGTATTTATTG
AATGTCTACTCCAAGAAAAAGCAGCTTTCATCTGTTATCATAGCTGATTTGGTAAAGTTAGAGGCTGAAAGGTGGCTATATAAAGCTGGTTTTGTTCAGT
GGCTTGTTCTTCTGATCATAGGAAACTATTATAAAATCGGATCATCGTACCTAGCAGTCTTTTGGCTTGTTCCACCAGCATTTGCATATGGTTTGCTTGA
AGCAACTCTGACACCAGCTCGGCTACCTAAGCCACTCAAACTTGCAACCCTCATGATGGGCTTGGCAGTACCAATCCTGATTTCTTCTGGAACTTTCATT
CGCTTCGCTGGAACAATTATCGGAATGGCAGTTCGATTCGACAGGAATCCTGGCGGCACACCAGAATGGCTGTGGAATATAATAATTTCCATTTTCATTG
CTGTTTGCATATGCCTGACTTTTATTTATGTACTTTCATATGTTCATCTTTCAGGTGCAAAAAGGTCAATCATTCTTGCAACCAGCATCCTGTTTGGCCT
CTCACTTATTTTAGTATTATCTGGTTTCATTCAACCTTTTACAGAAGACACTGCCAGAGCTGTAAATGTCGTGCATGTTGTCGATGCTTCAGGAAGATAT
GGTGAAAAGCAAGATCCTCTCTCTTATATATCTCTATTTTCAAACACCCCTGGAAAGCTTGAGAAGGAGGTTGAACAGATTAAAGAAGGATTCACATGTG
GTAAAGACAAGGTTGTTGATTTTGTCACCTTTTCAGTCAACTATGGTTGTTGGACCCATGATGATACTGAAAGTGGATGGAGCGAGTCAGATATTCCCAC
TTTGCATGTTGATAGCGATACCAAGGGGGGAGAAAGAATCACACGAGTTTTAATTGATACAAAATCCTCCGTGCGCTGGTCTCTTGCAATCAATACCAAG
GAGATAGAAGATTTCATTTTGAAAGGAAACTCAGAAGAATTAATTCCTTATGGCAACAAGACTAGTGTCGATGGATGGCATCACATTCAGTTTTCAGGAG
GGAAAGAGTCACCAAGGAAGTTTGAGCTAACTCTTTTCTGGTCAGTAAAAACTATGCCCTCTGCTGACAATGTGGATAGAACGGTTATACAGGACCAGCG
TCCCTTGTTGAAGTTAAGAACAGATGTTAACCGATTAACACCAAAAGCTGAGAGAGTTCTTGCAAAACTCCCTACATGGTGCTCCCTGTTTGGAAAATCG
ACATCTCCCCTCACCTTAGCTTTCTTGAGCAGTCTTCCTGTTAATTTCTAG
AA sequence
>Potri.008G039400.3 pacid=42808690 polypeptide=Potri.008G039400.3.p locus=Potri.008G039400 ID=Potri.008G039400.3.v4.1 annot-version=v4.1
MRKRPETSRSSNSQQRPPKQPPYANSTTNLSSSMKSIRSGSVWIILSAVIIYSCYSVHYYQFENLPSPLTAEQAGKRGFSEIQAIKHVKALTDFGPHPVG
SDSLDLALQYVLAEVENIKKNAYYEVDVEVDFFHAKTGANRLTSGLFRGKTLVYADLKHVVLRILPKFTPNQAADNTILVSSHIDTVFSTGGAGDCSSCV
AVMLELARGISQWAHGFKNGVIFLFNTGEEEGLSGAHSFITQHPWSKTIRLAVDLEAMGVGGKSGIFQAGPHPWAIENFASAAKYPSGNIIAQDLFSAGV
IKSATDFQVYKEVAGLSGLDFAFTDNGAVYHTKNDKLDLLKSGSLQHLGENMLAFLLRIASSPHLPKSKDMDKELKTGHDTAIFFDILGTYMIVYSQRFA
SMLHNSVILQSLLIWAASLFMGGSSATISLGLSCLSAILMLLFSISFSVFAAFIVPQISPSPVPYVANPLLVLGLFAAPALLGALTGQHLGYLILKKYLL
NVYSKKKQLSSVIIADLVKLEAERWLYKAGFVQWLVLLIIGNYYKIGSSYLAVFWLVPPAFAYGLLEATLTPARLPKPLKLATLMMGLAVPILISSGTFI
RFAGTIIGMAVRFDRNPGGTPEWLWNIIISIFIAVCICLTFIYVLSYVHLSGAKRSIILATSILFGLSLILVLSGFIQPFTEDTARAVNVVHVVDASGRY
GEKQDPLSYISLFSNTPGKLEKEVEQIKEGFTCGKDKVVDFVTFSVNYGCWTHDDTESGWSESDIPTLHVDSDTKGGERITRVLIDTKSSVRWSLAINTK
EIEDFILKGNSEELIPYGNKTSVDGWHHIQFSGGKESPRKFELTLFWSVKTMPSADNVDRTVIQDQRPLLKLRTDVNRLTPKAERVLAKLPTWCSLFGKS
TSPLTLAFLSSLPVNF

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G20660 Zn-dependent exopeptidases sup... Potri.008G039400
[exp]
0 1
AT1G26810 GALT1 galactosyltransferase1 (.1) Potri.010G168500
[exp]
4.89 0.6698
AT4G39910 ATUBP3 ubiquitin-specific protease 3 ... Potri.005G074900
[exp]
11.48 0.6908 Pt-UBP3.2
AT5G04410 NAC NAC2, ANAC078 Arabidopsis NAC domain contain... Potri.008G031800
[exp]
12.24 0.7114 NAC047,NAC2.2
AT4G08500 ARAKIN, ATMEKK1... MAPK/ERK kinase kinase 1 (.1) Potri.005G172200
[exp]
14.96 0.7037 MEKK1.1
AT3G59430 unknown protein Potri.017G029800
[exp]
15.96 0.6915
AT5G01960 RING/U-box superfamily protein... Potri.016G141200
[exp]
17.32 0.6368
AT1G60995 unknown protein Potri.001G211700
[exp]
22.13 0.6714
AT1G49670 NQR ARP protein (REF) (.1), ARP pr... Potri.009G103000
[exp]
32.17 0.6089
AT5G46070 Guanylate-binding family prote... Potri.011G058500
[exp]
54.49 0.6495
AT1G43130 LCV2 like COV 2 (.1) Potri.002G065800
[exp]
71.77 0.5971

Potri.008G039400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.