Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-MDPIP1.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53420 445 / 1e-159 PIP2;1, PIP2A PLASMA MEMBRANE INTRINSIC PROTEIN 2;1, plasma membrane intrinsic protein 2A (.1.2) AT5G60660 445 / 1e-159 PIP2F, PIP2;4 plasma membrane intrinsic protein 2;4 (.1) AT3G54820 444 / 3e-159 PIP2D, PIP2;5 PLASMA MEMBRANE INTRINSIC PROTEIN 2D, plasma membrane intrinsic protein 2;5 (.1) AT2G37170 442 / 3e-158 PIP2;2, PIP2B PLASMA MEMBRANE INTRINSIC PROTEIN 2;2, plasma membrane intrinsic protein 2 (.1) AT2G37180 437 / 2e-156 PIP2C, PIP2;3, RD28 RESPONSIVE TO DESICCATION 28, PLASMA MEMBRANE INTRINSIC PROTEIN 2C, PLASMA MEMBRANE INTRINSIC PROTEIN 2;3, Aquaporin-like superfamily protein (.1) AT2G16850 431 / 4e-154 PIP3B, PIP2;8 PLASMA MEMBRANE INTRINSIC PROTEIN 3B, plasma membrane intrinsic protein 2;8 (.1) AT4G35100 428 / 8e-153 SIMIP, PIP3A, PIP2;7, PIP3 PLASMA MEMBRANE INTRINSIC PROTEIN 3A, PLASMA MEMBRANE INTRINSIC PROTEIN 2;7, plasma membrane intrinsic protein 3 (.1.2) AT2G39010 428 / 1e-152 PIP2E, PIP2;6 PLASMA MEMBRANE INTRINSIC PROTEIN 2;6, plasma membrane intrinsic protein 2E (.1) AT4G00430 361 / 3e-126 PIP1;4, TMP-C, PIP1E TRANSMEMBRANE PROTEIN C, PLASMA MEMBRANE INTRINSIC PROTEIN 1E, plasma membrane intrinsic protein 1;4 (.1.2) AT2G45960 354 / 1e-123 PIP1;2, ATHH2, TMP-A, PIP1B TRANSMEMBRANE PROTEIN A, NAMED PLASMA MEMBRANE INTRINSIC PROTEIN 1;2, plasma membrane intrinsic protein 1B (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G222700 [exp] 495 / 2e-179 AT3G54820 484 / 6e-175 PLASMA MEMBRANE INTRINSIC PROTEIN 2D, plasma membrane intrinsic protein 2;5 (.1) Potri.006G128000 [exp] 467 / 3e-168 AT2G37170 487 / 5e-176 PLASMA MEMBRANE INTRINSIC PROTEIN 2;2, plasma membrane intrinsic protein 2 (.1) Potri.006G128200 [exp] 466 / 8e-168 AT2G37170 490 / 3e-177 PLASMA MEMBRANE INTRINSIC PROTEIN 2;2, plasma membrane intrinsic protein 2 (.1) Potri.009G013900 [exp] 463 / 1e-166 AT2G37170 458 / 8e-165 PLASMA MEMBRANE INTRINSIC PROTEIN 2;2, plasma membrane intrinsic protein 2 (.1) Potri.016G089500 [exp] 454 / 7e-163 AT2G37180 458 / 1e-164 RESPONSIVE TO DESICCATION 28, PLASMA MEMBRANE INTRINSIC PROTEIN 2C, PLASMA MEMBRANE INTRINSIC PROTEIN 2;3, Aquaporin-like superfamily protein (.1) Potri.004G176300 [exp] 436 / 3e-156 AT4G35100 513 / 0.0 PLASMA MEMBRANE INTRINSIC PROTEIN 3A, PLASMA MEMBRANE INTRINSIC PROTEIN 2;7, plasma membrane intrinsic protein 3 (.1.2) Potri.009G136600 [exp] 429 / 4e-153 AT4G35100 493 / 1e-178 PLASMA MEMBRANE INTRINSIC PROTEIN 3A, PLASMA MEMBRANE INTRINSIC PROTEIN 2;7, plasma membrane intrinsic protein 3 (.1.2) Potri.005G109300 [exp] 370 / 4e-130 AT2G16850 413 / 4e-147 PLASMA MEMBRANE INTRINSIC PROTEIN 3B, plasma membrane intrinsic protein 2;8 (.1) Potri.016G113300 [exp] 359 / 2e-125 AT4G00430 524 / 0.0 TRANSMEMBRANE PROTEIN C, PLASMA MEMBRANE INTRINSIC PROTEIN 1E, plasma membrane intrinsic protein 1;4 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019934 [exp] 470 / 3e-169 AT2G37170 474 / 6e-171 PLASMA MEMBRANE INTRINSIC PROTEIN 2;2, plasma membrane intrinsic protein 2 (.1) Lus10023184 [exp] 462 / 4e-166 AT2G37170 490 / 3e-177 PLASMA MEMBRANE INTRINSIC PROTEIN 2;2, plasma membrane intrinsic protein 2 (.1) Lus10023515 [exp] 449 / 8e-161 AT3G54820 482 / 5e-174 PLASMA MEMBRANE INTRINSIC PROTEIN 2D, plasma membrane intrinsic protein 2;5 (.1) Lus10040399 [exp] 442 / 6e-158 AT3G54820 474 / 1e-170 PLASMA MEMBRANE INTRINSIC PROTEIN 2D, plasma membrane intrinsic protein 2;5 (.1) Lus10014978 [exp] 429 / 4e-153 AT2G16850 514 / 0.0 PLASMA MEMBRANE INTRINSIC PROTEIN 3B, plasma membrane intrinsic protein 2;8 (.1) Lus10039222 [exp] 428 / 9e-153 AT2G16850 518 / 0.0 PLASMA MEMBRANE INTRINSIC PROTEIN 3B, plasma membrane intrinsic protein 2;8 (.1) Lus10027467 [exp] 427 / 2e-152 AT2G16850 518 / 0.0 PLASMA MEMBRANE INTRINSIC PROTEIN 3B, plasma membrane intrinsic protein 2;8 (.1) Lus10041397 [exp] 386 / 2e-136 AT3G53420 412 / 6e-147 PLASMA MEMBRANE INTRINSIC PROTEIN 2;1, plasma membrane intrinsic protein 2A (.1.2) Lus10028273 [exp] 350 / 7e-122 AT4G00430 511 / 0.0 TRANSMEMBRANE PROTEIN C, PLASMA MEMBRANE INTRINSIC PROTEIN 1E, plasma membrane intrinsic protein 1;4 (.1.2) Lus10035483 [exp] 337 / 8e-117 AT2G45960 520 / 0.0 TRANSMEMBRANE PROTEIN A, NAMED PLASMA MEMBRANE INTRINSIC PROTEIN 1;2, plasma membrane intrinsic protein 1B (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00230 [poplar] [flax] MIP Major intrinsic protein
Representative CDS sequence Show only first row Show all	>Potri.008G039600.1 pacid=42805814 polypeptide=Potri.008G039600.1.p locus=Potri.008G039600 ID=Potri.008G039600.1.v4.1 annot-version=v4.1 ATGGCAAAGGATACTGAAGTGGCAGAGGCAGGATCATTCTCTGCAAAAGATTACCAAGACCCACCCCCAGCACCATTGATTGATGCCGAAGAGCTAACAA AGTGGTCATTTTACAGGGCCTTGATTGCTGAGTTTATAGCAACTATGCTCTTTCTTTACATCACTGTTTTGACTGTTATTGGGTACAAAAGCCAGATTGA TGGAAATGCTGATCCTTGTGGTGGGGTTGGTATTCTTGGTATTGCTTGGGCCTTTGGTGGCATGATCTTTGTTCTTGTTTACTGCACTGCTGGTATTTCA GGGGGTCACATTAACCCAGCAGTGACATTTGGGCTGTTCTTGGCCAGGAAGGTGTCTTTGATCAGGGCTGTGATGTACATGGTGGCCCAATGCGCGGGAG CCATATGTGGTGTTGGGTTGGTCAAGGCCTTCCAAAAGTCTTACTACACAAAATATAATGGCGGAGCCAACGTTTTGGCTGATGGGTACAGCACAGGCAC TGGATTGGGCGCTGAGATTATTGGGACTTTTGTCCTGGTCTACACTGTGTTCTCTGCTACTGATCCCAAGAGGAGTGCTAGGGACTCCCATGTGCCTGTA TTGGCTCCTCTCCCAATTGGATTTGCTGTGTTCATGGTTCACTTGGCCACCATCCCAATCACAGGAACTGGCATCAACCCTGCTAGGAGTTTTGGAGCTG CTGTTATCTACAACAACAAGAAGGCCTGGCATGACCAGTGGATCTTTTGGGCTGGACCCTTCATTGGTGCAGCCATAGCAGCCTTCTACCACCAATTCAT CTTGAGAGCAGGAGCTATTAAGGCTCTCGGGTCATTCAGGAGCAACCCGAATGTCTAA
AA sequence Show only first row Show all	>Potri.008G039600.1 pacid=42805814 polypeptide=Potri.008G039600.1.p locus=Potri.008G039600 ID=Potri.008G039600.1.v4.1 annot-version=v4.1 MAKDTEVAEAGSFSAKDYQDPPPAPLIDAEELTKWSFYRALIAEFIATMLFLYITVLTVIGYKSQIDGNADPCGGVGILGIAWAFGGMIFVLVYCTAGIS GGHINPAVTFGLFLARKVSLIRAVMYMVAQCAGAICGVGLVKAFQKSYYTKYNGGANVLADGYSTGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPV LAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNKKAWHDQWIFWAGPFIGAAIAAFYHQFILRAGAIKALGSFRSNPNV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G53420		PIP2;1, PIP2A	PLASMA MEMBRANE INTRINSIC PROT...		Potri.008G039600 [exp]	0	1	Pt-MDPIP1.2
AT1G22540			Major facilitator superfamily ...		Potri.013G106600 [exp]	2.64	0.8995
AT2G46970	bHLH	PIL1, bHLH124	phytochrome interacting factor...		Potri.014G111400 [exp]	3.16	0.9365
AT4G00430		PIP1;4, TMP-C, ...	TRANSMEMBRANE PROTEIN C, PLASM...		Potri.010G191900 [exp]	3.46	0.8900
AT5G51110			Transcriptional coactivator/pt...		Potri.012G112400 [exp]	6.16	0.9297
AT1G69040		ACR4	ACT domain repeat 4 (.1.2)		Potri.003G167800 [exp]	7.34	0.8724
AT5G23530		ATCXE18	carboxyesterase 18 (.1)		Potri.019G014302 [exp]	8.12	0.9237
AT2G29100		ATGLR2.9	GLUTAMATE RECEPTOR 2.9, gluta...		Potri.004G052400 [exp]	10.77	0.9118
AT5G13150		ATEXO70C1	exocyst subunit exo70 family p...		Potri.001G060700 [exp]	12.00	0.8980
AT3G47570			Leucine-rich repeat protein ki...		Potri.017G152080 [exp]	15.96	0.9032
AT2G03440		ATNRP1	nodulin-related protein 1 (.1)		Potri.010G161200 [exp]	16.91	0.8787

Compare expression of checked genes

Potri.008G039600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.