Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13810 143 / 2e-42 Restriction endonuclease, type II-like superfamily protein (.1) AT1G67660 110 / 1e-29 Restriction endonuclease, type II-like superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G222500 [exp] 260 / 7e-88 AT1G13810 242 / 1e-78 Restriction endonuclease, type II-like superfamily protein (.1) Potri.010G054800 [exp] 112 / 4e-30 AT1G67660 391 / 7e-136 Restriction endonuclease, type II-like superfamily protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010434 [exp] 191 / 2e-60 AT1G13810 216 / 5e-68 Restriction endonuclease, type II-like superfamily protein (.1) Lus10017632 [exp] 187 / 1e-59 AT1G13810 216 / 6e-69 Restriction endonuclease, type II-like superfamily protein (.1) Lus10033589 [exp] 140 / 9e-40 AT1G13810 161 / 4e-45 Restriction endonuclease, type II-like superfamily protein (.1) Lus10012108 [exp] 86 / 1e-21 AT1G13810 113 / 2e-31 Restriction endonuclease, type II-like superfamily protein (.1) Lus10011377 [exp] 61 / 3e-12 AT1G67660 169 / 1e-53 Restriction endonuclease, type II-like superfamily protein (.1.2.3) Lus10006437 [exp] 61 / 3e-12 AT1G67660 172 / 8e-55 Restriction endonuclease, type II-like superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0236 [poplar] [flax] PDDEXK PF09588 [poplar] [flax] YqaJ YqaJ-like viral recombinase domain
Representative CDS sequence Show only first row Show all	>Potri.008G039800.2 pacid=42806827 polypeptide=Potri.008G039800.2.p locus=Potri.008G039800 ID=Potri.008G039800.2.v4.1 annot-version=v4.1 ATGGTTGATATTAGCAACAGAAGAAACTACTCTAGCCAGGTTTTTTTGGATCCATCTGAAAGTTTCAGTGGGGCAATTGGTTTTTGGCGTCACAGGAGAG TCCAGCTCTGGTTAGAGAAACTTGGTGCAAAAGAACCATTTTATGGTAACATGGCTATCTGTTGGACCAATGCCAAAGAAGAGGAAGCACTTGAAAGATA TAAGTTGATTACAGGAAATATAGTTTCGTTTCCCAAGTTTCAGCTTTCATCTGATGGGCTAGTTGACAAGTGTTCTGGGTTGAATTCCAGAGGAGTGTTG GAAATAAAGTGTCCATTTTTTAAAGGAGAAATGTGCAGGGCTTCACCTTGGAAGCAGATCCCTCTTTATTGTGTTCCACAAGCTCAAGGTTTAATCGAAA TACTAGACAAGGATTGGATGGATTTCTATGTTTGGACTCCTAATGGAAGCGGTCTGTTTGCATTATATCGAGACGAGGCATACTGGATGCTCTGA
AA sequence Show only first row Show all	>Potri.008G039800.2 pacid=42806827 polypeptide=Potri.008G039800.2.p locus=Potri.008G039800 ID=Potri.008G039800.2.v4.1 annot-version=v4.1 MVDISNRRNYSSQVFLDPSESFSGAIGFWRHRRVQLWLEKLGAKEPFYGNMAICWTNAKEEEALERYKLITGNIVSFPKFQLSSDGLVDKCSGLNSRGVL EIKCPFFKGEMCRASPWKQIPLYCVPQAQGLIEILDKDWMDFYVWTPNGSGLFALYRDEAYWML

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G13810			Restriction endonuclease, type...		Potri.008G039800 [exp]	0	1
					Potri.007G113400 [exp]	1.00	0.8858
AT5G55840			Pentatricopeptide repeat (PPR)...		Potri.001G368700 [exp]	2.00	0.8838
AT2G35510		SRO1	similar to RCD one 1 (.1)		Potri.005G149701 [exp]	4.47	0.8259
AT5G55390		EDM2	ENHANCED DOWNY MILDEW 2 (.1.2)		Potri.001G359900 [exp]	4.58	0.8690
AT3G56320			PAP/OAS1 substrate-binding dom...		Potri.019G056800 [exp]	7.74	0.8372
AT1G55325		MAB2, GCT	MACCHI-BOU 2, GRAND CENTRAL, R...		Potri.003G220800 [exp]	7.74	0.8624
AT5G64320			Pentatricopeptide repeat (PPR)...		Potri.013G002800 [exp]	8.71	0.8273
AT4G20020			unknown protein		Potri.004G218650 [exp]	8.94	0.8419
AT3G61690			nucleotidyltransferases (.1)		Potri.002G169732 [exp]	9.21	0.8300
AT5G06810			Mitochondrial transcription te...		Potri.016G048200 [exp]	9.79	0.8390

Compare expression of checked genes

Potri.008G039800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.