Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19290 507 / 0 alpha/beta-Hydrolases superfamily protein (.1) AT5G14980 465 / 5e-166 alpha/beta-Hydrolases superfamily protein (.1) AT1G11090 230 / 1e-73 alpha/beta-Hydrolases superfamily protein (.1) AT2G39410 203 / 3e-63 alpha/beta-Hydrolases superfamily protein (.1.2) AT2G39420 201 / 2e-62 alpha/beta-Hydrolases superfamily protein (.1) AT3G62860 196 / 7e-60 alpha/beta-Hydrolases superfamily protein (.1) AT2G39400 190 / 3e-58 alpha/beta-Hydrolases superfamily protein (.1) AT2G47630 189 / 2e-57 alpha/beta-Hydrolases superfamily protein (.1) AT3G55180 186 / 1e-56 alpha/beta-Hydrolases superfamily protein (.1) AT1G52760 181 / 2e-54 LysoPL2 lysophospholipase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G222300 [exp] 604 / 0 AT5G19290 472 / 8e-169 alpha/beta-Hydrolases superfamily protein (.1) Potri.001G466700 [exp] 347 / 2e-119 AT5G14980 346 / 6e-119 alpha/beta-Hydrolases superfamily protein (.1) Potri.011G046500 [exp] 231 / 8e-74 AT1G11090 461 / 1e-164 alpha/beta-Hydrolases superfamily protein (.1) Potri.008G049000 [exp] 206 / 3e-64 AT2G39420 479 / 8e-172 alpha/beta-Hydrolases superfamily protein (.1) Potri.017G114800 [exp] 203 / 2e-62 AT5G16120 520 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.010G212200 [exp] 200 / 6e-62 AT2G39420 462 / 4e-165 alpha/beta-Hydrolases superfamily protein (.1) Potri.003G059200 [exp] 192 / 7e-59 AT1G52760 560 / 0.0 lysophospholipase 2 (.1) Potri.001G175000 [exp] 191 / 3e-58 AT1G52760 554 / 0.0 lysophospholipase 2 (.1) Potri.014G129000 [exp] 188 / 7e-57 AT3G62860 499 / 5e-179 alpha/beta-Hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036530 [exp] 543 / 0 AT5G19290 517 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10041399 [exp] 496 / 4e-178 AT5G19290 464 / 7e-166 alpha/beta-Hydrolases superfamily protein (.1) Lus10011212 [exp] 223 / 1e-70 AT1G11090 430 / 2e-152 alpha/beta-Hydrolases superfamily protein (.1) Lus10017601 [exp] 207 / 2e-64 AT5G16120 514 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10040328 [exp] 204 / 2e-63 AT2G39420 468 / 2e-167 alpha/beta-Hydrolases superfamily protein (.1) Lus10018466 [exp] 195 / 9e-61 AT1G11090 382 / 1e-134 alpha/beta-Hydrolases superfamily protein (.1) Lus10023448 [exp] 202 / 7e-60 AT2G39420 459 / 2e-159 alpha/beta-Hydrolases superfamily protein (.1) Lus10009169 [exp] 188 / 4e-57 AT5G16120 490 / 2e-175 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10034331 [exp] 189 / 1e-56 AT1G77420 499 / 8e-178 alpha/beta-Hydrolases superfamily protein (.1) Lus10025754 [exp] 187 / 1e-56 AT1G52760 564 / 0.0 lysophospholipase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF12695 [poplar] [flax] Abhydrolase_5 Alpha/beta hydrolase family
Representative CDS sequence Show only first row Show all	>Potri.008G040000.1 pacid=42808044 polypeptide=Potri.008G040000.1.p locus=Potri.008G040000 ID=Potri.008G040000.1.v4.1 annot-version=v4.1 ATGGTGCAGCACCCAGTGGCAGAAGCCAACGATCAAAGCCCATTCGGGACCCTTTCCCCCTCTGAATTCTACGCCAAACACCAAGTCACCCACAATTCCG AATACATCACTAACTCCCGGGGTCTCAAGCTCTTCACTCAATGGTGGACCCCACTTCCCCCGACGAAAACTATTGGCTGCGTAGCCGTTGTCCATGGCTT CACCGGTGAATCCAGCTGGTTCGTCCAATTAACTTCAATTCTCTTTGCTAAACATGGGTTCGTTGTTTGCGCTATTGATCACCAAGGCCATGGCTTCTCT GATGGGCTTGACAACTTGATATATCACATCCCAGATATCAACCCAGTTGTGGAAGATTGCATGCGGTATTTTAAGACTTTTCGCGAGACTCGCGCGCCCA ATTTGCCGGCTTTTCTGTACTCGGAATCCCTGGGTGGGGCGATAGCTTTGTACATTACGCTCCGTCAGAGAGGCGCGTGGGATGGGTTGATTTTGAATGG GGCTATGTGCGGAATTAGTGCCAAGTTCAAGCCACCGTGGCCGTTGGAGCACTTGCTTTTCGTAGTCGCGGCGGTGGTACCCACTTGGAGCGTGATTCCC ACTCGTGGGTCGATTCCCGAGTTGTCGTTCAAGGAAGAGTGGAAGCGGAAGTTGGGGTGTGCGAGCCCGGGGAGGGTGACAATGAGACCACGCGCGGCTA CGGCATACGAGCTTATGAGAGTGTGTAAGGAACTTCAAGGGAGGTTTGAGGAGGTGGATGTGCCTTTGTTGGTTGTGCATGGTGGTGACGACGTGGTGTG CGACCCTGCGAGCGCCAAGGAGTTGTATGAACGCGCTGCGAGTGCTGATAAGACATTGAAGATGTATTCTGGGATGTGGCATCAGTTGATCGGTGAGCCC GAGGAGAATGTGAATTTGGTGTTTGGGGATATGGTCGAGTGGCTCCAAAACCGTGCTGAACGCTATAAGAAGGATGGGGATGTGGCTCGCGCTGCTGCGA GTGATGGTCGCGCGTGA
AA sequence Show only first row Show all	>Potri.008G040000.1 pacid=42808044 polypeptide=Potri.008G040000.1.p locus=Potri.008G040000 ID=Potri.008G040000.1.v4.1 annot-version=v4.1 MVQHPVAEANDQSPFGTLSPSEFYAKHQVTHNSEYITNSRGLKLFTQWWTPLPPTKTIGCVAVVHGFTGESSWFVQLTSILFAKHGFVVCAIDHQGHGFS DGLDNLIYHIPDINPVVEDCMRYFKTFRETRAPNLPAFLYSESLGGAIALYITLRQRGAWDGLILNGAMCGISAKFKPPWPLEHLLFVVAAVVPTWSVIP TRGSIPELSFKEEWKRKLGCASPGRVTMRPRAATAYELMRVCKELQGRFEEVDVPLLVVHGGDDVVCDPASAKELYERAASADKTLKMYSGMWHQLIGEP EENVNLVFGDMVEWLQNRAERYKKDGDVARAAASDGRA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G19290			alpha/beta-Hydrolases superfam...		Potri.008G040000 [exp]	0	1
AT5G14210			Leucine-rich repeat protein ki...		Potri.001G333300 [exp]	4.24	0.7949
AT1G01630			Sec14p-like phosphatidylinosit...		Potri.001G068000 [exp]	5.65	0.7910
					Potri.018G076150 [exp]	9.16	0.7466
AT4G15800		RALFL33	ralf-like 33 (.1)		Potri.008G208200 [exp]	10.77	0.7569
AT2G16910	bHLH	AMS, bHLH021	ABORTED MICROSPORES, basic hel...		Potri.009G136300 [exp]	12.88	0.7047
AT2G24800			Peroxidase superfamily protein...		Potri.018G015500 [exp]	14.76	0.8154
AT2G28410			unknown protein		Potri.009G013800 [exp]	14.96	0.7681
AT1G17200			Uncharacterised protein family...		Potri.001G436400 [exp]	15.87	0.7704
AT4G00820		IQD17	IQ-domain 17 (.1)		Potri.002G178500 [exp]	19.62	0.7770
AT2G35680			Phosphotyrosine protein phosph...		Potri.002G136700 [exp]	33.39	0.6926

Compare expression of checked genes

Potri.008G040000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.