Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54960 288 / 7e-92 ATPDI1, ATPDIL1-3 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 1, PDI-like 1-3 (.1.2) AT5G60640 270 / 1e-84 ATPDI2, ATPDIL1-4 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 2, PDI-like 1-4 (.1.2.3) AT1G52260 144 / 1e-37 ATPDI3, ATPDIL1-5 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 3, PDI-like 1-5 (.1) AT3G16110 135 / 2e-34 ATPDI4, ATPDIL1-6 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 4, PDI-like 1-6 (.1) AT1G77510 110 / 5e-26 ATPDI6, ATPDIL1-2 PROTEIN DISULFIDE ISOMERASE 6, PDI-like 1-2 (.1) AT1G21750 108 / 2e-25 ATPDI5, ATPDIL1-1 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) AT4G27080 85 / 2e-17 ATPDI7, ATPDIL5-4 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 7, PDI-like 5-4 (.1.2) AT2G47470 80 / 3e-16 ATPDI11, ATPDIL2-1, UNE5, MEE30 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) AT3G20560 76 / 9e-15 ATPDI12, ATPDIL5-3 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 12, PDI-like 5-3 (.1) AT1G35620 76 / 2e-14 ATPDI8, ATPDIL5-2 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 8, PDI-like 5-2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G222100 [exp] 373 / 3e-126 AT3G54960 275 / 2e-87 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 1, PDI-like 1-3 (.1.2) Potri.009G013600 [exp] 291 / 3e-92 AT5G60640 712 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 2, PDI-like 1-4 (.1.2.3) Potri.001G183500 [exp] 121 / 1e-29 AT3G16110 650 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 4, PDI-like 1-6 (.1) Potri.005G179000 [exp] 112 / 1e-26 AT1G21750 680 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) Potri.002G082100 [exp] 105 / 2e-24 AT1G21750 689 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) Potri.002G198300 [exp] 87 / 2e-18 AT2G47470 530 / 0.0 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) Potri.001G419300 [exp] 86 / 6e-18 AT3G20560 761 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 12, PDI-like 5-3 (.1) Potri.014G122800 [exp] 82 / 6e-17 AT2G47470 551 / 0.0 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) Potri.013G111400 [exp] 82 / 2e-16 AT1G35620 533 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 8, PDI-like 5-2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037403 [exp] 280 / 4e-88 AT5G60640 729 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 2, PDI-like 1-4 (.1.2.3) Lus10022581 [exp] 257 / 2e-79 AT5G60640 741 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 2, PDI-like 1-4 (.1.2.3) Lus10021478 [exp] 252 / 2e-77 AT5G60640 740 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 2, PDI-like 1-4 (.1.2.3) Lus10041307 [exp] 214 / 5e-63 AT5G60640 536 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 2, PDI-like 1-4 (.1.2.3) Lus10035870 [exp] 128 / 7e-32 AT1G52260 632 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 3, PDI-like 1-5 (.1) Lus10018156 [exp] 107 / 7e-25 AT1G21750 710 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) Lus10025792 [exp] 100 / 1e-22 AT3G16110 553 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 4, PDI-like 1-6 (.1) Lus10029681 [exp] 100 / 2e-22 AT1G21750 684 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) Lus10042721 [exp] 99 / 9e-22 AT1G21750 684 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) Lus10036337 [exp] 82 / 1e-16 AT2G47470 548 / 0.0 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [poplar] [flax] Thioredoxin PF00085 [poplar] [flax] Thioredoxin Thioredoxin CL0172 [poplar] [flax] Thioredoxin PF13848 [poplar] [flax] Thioredoxin_6 Thioredoxin-like domain
Representative CDS sequence Show only first row Show all	>Potri.008G040100.2 pacid=42805909 polypeptide=Potri.008G040100.2.p locus=Potri.008G040100 ID=Potri.008G040100.2.v4.1 annot-version=v4.1 ATGTCAAGAGCTGCAAGAATCTCTCTCTTTCTCTTCACTTCAATCCTTCTTCTCTTCACCATCTTATGGTTTTCGCCTGTCTCCCATCTTCCATCATCAC TTCCACTAGTTCTTTCATTCTTTAAACACCAGGAAGACACCTTCATCTTTGAAAGCAACACCCACAAGGATATCTATTATGATGAGGGTCTTGAGAATCA AGGGACTAACTCTTGGCCAGAGAATCCAGTGTTTGATGAGAAGGATGTGGTGGTGCTCACAGAGAAGAACTTCGGTGATTTCATTGCTACAAATCCGTAT GTGATGGTGGAGTTCTATGCACCATGGTGCTATTGGAGTCGTAAGTTGGCACCAGAATACTCTGCTGCTGCTACCCTACTGAAAGGTGAGGCCGTGCTTG CAAAAGTTGATGCTACAGTAGAAATGGGGCTGGGAAGGAAGTATAAAATTCAGGGGTATCCTTCTCTGCTTTTATTTGCTGGTGGAATTCAAAAGTCTAG CTATTATGGTGAAAGGACCAGAGATGCTATTGCAACTTGGATGAGGCAGAAAAATGGCCTGGTTGTTCAAACTGTATCAACAACAGAGGAGGCTAATAGG ATATTGAGGACTAATTCTGTGATCGTAATGGGATTCCTTGACACTTTAGAGGGTTCAGATACCAAGGAGCTTACTGCTGCTTCCAGACTGCATGCTGATA TCAATTTCTATCAAACTGATAATGTTGATGTTGCAAGGCTGTTTCGCATTGACCCGCAAGTCAAACCTCCTGCTTTAGTCATGCTGAAATGGGAGGCTGC AAATCGTAGCCATGTTGGTTTTGACGGTCAATTCACCGAATCAGAAATATCTGACTTTGTATCCACTAACAACTTTCAATTCACCAAATCAGAGACATCT GACTCTGTATCCACAAACAACGCTCCTTCGGTGATCACTTTTACGGTAGACGATGCTTCACGTATTTTAGGCAATCCTATGAAACAGCTGTGGCTATTTT CAACAAAATATTCGTTGGAGCTGATATCCACATTTGAAGAGGCAGCAAAAGCTTTCAGAAACAAGCTTGTATTTGTCTATGTGGAGACTGATGGTACAAA TTTGGGACTTGGAGCAAACCTTGCTTTTCAATTTGGAGTGCCTGAAGGTTCACCAAGAGTTGTAGCTTGCATGGCTAATGGTGACAAGTATCTATATCAT GGTGAAATGACCTTTGATGGTATTAAGTCATTTGCTGAAGAGTTTCTGGAAGATAATCTTTCAATCCATTCAGTTCCAATTTCAAAGTCAGCTCTTCGAC TTCCGTCAGATTCTCATCAATCCAGTCCGTCTTTGTCTTCACGTGTAAACTATATATAG
AA sequence Show only first row Show all	>Potri.008G040100.2 pacid=42805909 polypeptide=Potri.008G040100.2.p locus=Potri.008G040100 ID=Potri.008G040100.2.v4.1 annot-version=v4.1 MSRAARISLFLFTSILLLFTILWFSPVSHLPSSLPLVLSFFKHQEDTFIFESNTHKDIYYDEGLENQGTNSWPENPVFDEKDVVVLTEKNFGDFIATNPY VMVEFYAPWCYWSRKLAPEYSAAATLLKGEAVLAKVDATVEMGLGRKYKIQGYPSLLLFAGGIQKSSYYGERTRDAIATWMRQKNGLVVQTVSTTEEANR ILRTNSVIVMGFLDTLEGSDTKELTAASRLHADINFYQTDNVDVARLFRIDPQVKPPALVMLKWEAANRSHVGFDGQFTESEISDFVSTNNFQFTKSETS DSVSTNNAPSVITFTVDDASRILGNPMKQLWLFSTKYSLELISTFEEAAKAFRNKLVFVYVETDGTNLGLGANLAFQFGVPEGSPRVVACMANGDKYLYH GEMTFDGIKSFAEEFLEDNLSIHSVPISKSALRLPSDSHQSSPSLSSRVNYI

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G54960		ATPDI1, ATPDIL1...	ARABIDOPSIS THALIANA PROTEIN D...		Potri.008G040100 [exp]	0	1
AT5G18260			RING/U-box superfamily protein...		Potri.013G060900 [exp]	2.64	0.8903
					Potri.004G212550 [exp]	4.47	0.9088
AT2G17710			unknown protein		Potri.005G107800 [exp]	4.89	0.8973
AT5G03570		FPN2, ATIREG2	FERROPORTIN 2, ARABIDOPSIS THA...		Potri.016G128600 [exp]	6.00	0.8823
AT2G47115			unknown protein		Potri.002G190200 [exp]	6.70	0.8777
AT1G63245		CLE14	CLAVATA3/ESR-RELATED 14 (.1)		Potri.015G139900 [exp]	8.06	0.8919
AT4G38640			Plasma-membrane choline transp...		Potri.009G132900 [exp]	9.00	0.8399
AT1G31690			Copper amine oxidase family pr...		Potri.008G151900 [exp]	9.16	0.8701	DAO.3
AT2G23200			Protein kinase superfamily pro...		Potri.005G143200 [exp]	10.09	0.8763
AT2G28930		APK1B	protein kinase 1B (.1.2.3)		Potri.009G031300 [exp]	10.81	0.8645	APK1.1

Compare expression of checked genes

Potri.008G040100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.