Plant FIBer expression Database

Potri.008G040700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G48850 672 / 0 EMB1144 embryo defective 1144, chorismate synthase, putative / 5-enolpyruvylshikimate-3-phosphate phospholyase, putative (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G221600
[exp]
758 / 0 AT1G48850 733 / 0.0 embryo defective 1144, chorismate synthase, putative / 5-enolpyruvylshikimate-3-phosphate phospholyase, putative (.1.2.3)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10037189
[exp]
665 / 0 AT1G48850 738 / 0.0 embryo defective 1144, chorismate synthase, putative / 5-enolpyruvylshikimate-3-phosphate phospholyase, putative (.1.2.3)
Lus10036738
[exp]
655 / 0 AT1G48850 733 / 0.0 embryo defective 1144, chorismate synthase, putative / 5-enolpyruvylshikimate-3-phosphate phospholyase, putative (.1.2.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF01264 Chorismate_synt Chorismate synthase
Representative CDS sequence
>Potri.008G040700.1 pacid=42806447 polypeptide=Potri.008G040700.1.p locus=Potri.008G040700 ID=Potri.008G040700.1.v4.1 annot-version=v4.1
ATGGCTTCTTCTACCCTTACTTCCAAGTCCTTCCTCGATTCCTCAAGAATCGATACCGCTTCGCTCTCGTCCGCCCACCTCCGTAAACTCTCATTCTCCT
CCGTTCAGATCTCCTCCCGCTCACGTCTTCCAAAGAAACTCCAAATAAATGCGGCGGGGAGCACATTTGGGAATAATTTTAGAGTAACAACATTTGGTGA
GTCACACGGTGGTGGTGTTGGTTGTATAATCGACGGATGTCCTCCGCGCATCCCGCTCTCCGAATCTGACATGCAATTTGATCTAGACAGAAGGAGGCCT
GGTCAGAGCCGAATTACGACTCCAAGAAAAGAGACGGATACCTGCAAAATATCTTCCGGTGTTTCTGAAGGACAGACTACTGGGACGCCTATTCATGTAT
TTGTGCCAAATACTGATCAGAGAGGATTTGATTACAATGAAATGTCTGTTGCTTACAGGCCTTCACATGCAGATGCGACTTATGACATGAAGTATGGTGT
TAGATCAGTTCAGGGTGGGGGTAGATCTTCAGCAAGAGAAACAATTGGAAGAGTTGCCGCTGGAGCTGTTGCAAAGAAAATTCTTAAGCTATATGCAGGA
ACTGAGATTCTTGCTTATGTCTCTCAAGTCCACAAGGTTGTACTTCCTGAAGGAGTGGTTAATCATGACTCTCTTTCACTTGATCAGATAGAGAGCAATA
TTGTCAGATGTCCAGATCCTGAATATGCAGAGAAGATGATAGCCGCCATTGATGCTGTCCGAGTGAAAGGGGATTCTGTTGGTGGTGTGGTCACGTGTAT
TGTAAGGAATGCACCACGTGGGCTTGGTTCACCAGTCTTTGACAAACTTGAAGCTGAGCTTGCTAAAGCTGCTATGTCACTACCTGCAACGAAGGGCTTT
GAATTTGGGAGTGGATTTTCAGGTACTTTCTTGAGTGGGAGCGAACATAATGATGAGTTCTACACAGATGAACATGGAAGAATACGAACAAGAACAAATC
GATCTGGTGGAATACAGGGAGGAATATCAAACGGTGAAATTATAAACTTGAGAATAGCTTTCAAGCCAACATCTACTATAGGAAGGAAGCAACATACAGT
TACTAGAGATAAAAAGGAGATAGAACTAATAGCTCGTGGTCGCCATGATCCCTGTGTTGTCCCACGAGCGGTGCCAATGGTGGAAGCTATGGTAGCCTTG
GTGCTGATGGACCAGTTGATGGCACAATTCTCACAAAGTTATCTGTTTCCCATCAATCCAGACCTACAAGAACCCTTGACAATGCCAAGACTTGAGGCAG
CCAACGCATCTGTATGA
AA sequence
>Potri.008G040700.1 pacid=42806447 polypeptide=Potri.008G040700.1.p locus=Potri.008G040700 ID=Potri.008G040700.1.v4.1 annot-version=v4.1
MASSTLTSKSFLDSSRIDTASLSSAHLRKLSFSSVQISSRSRLPKKLQINAAGSTFGNNFRVTTFGESHGGGVGCIIDGCPPRIPLSESDMQFDLDRRRP
GQSRITTPRKETDTCKISSGVSEGQTTGTPIHVFVPNTDQRGFDYNEMSVAYRPSHADATYDMKYGVRSVQGGGRSSARETIGRVAAGAVAKKILKLYAG
TEILAYVSQVHKVVLPEGVVNHDSLSLDQIESNIVRCPDPEYAEKMIAAIDAVRVKGDSVGGVVTCIVRNAPRGLGSPVFDKLEAELAKAAMSLPATKGF
EFGSGFSGTFLSGSEHNDEFYTDEHGRIRTRTNRSGGIQGGISNGEIINLRIAFKPTSTIGRKQHTVTRDKKEIELIARGRHDPCVVPRAVPMVEAMVAL
VLMDQLMAQFSQSYLFPINPDLQEPLTMPRLEAANASV

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G48850 EMB1144 embryo defective 1144, chorism... Potri.008G040700
[exp]
0 1
AT3G24530 AAA-type ATPase family protein... Potri.006G158600
[exp]
3.46 0.6995
AT5G40760 G6PD6 glucose-6-phosphate dehydrogen... Potri.017G070200
[exp]
13.71 0.7096 Pt-ACG12.2
AT2G46760 D-arabinono-1,4-lactone oxidas... Potri.002G178300
[exp]
15.00 0.6763
AT1G10650 SBP (S-ribonuclease binding pr... Potri.012G082200
[exp]
15.03 0.7168
AT4G14420 HR-like lesion-inducing protei... Potri.008G165200
[exp]
52.24 0.6294
AT5G47530 Auxin-responsive family protei... Potri.010G156600
[exp]
67.18 0.6279
AT3G57530 ATCPK32, CDPK32... calcium-dependent protein kina... Potri.006G052900
[exp]
72.64 0.5587 CPK14.1
AT1G77420 alpha/beta-Hydrolases superfam... Potri.010G124000
[exp]
72.74 0.6249
AT2G40540 ATKUP2, ATKT2, ... potassium transporter 2 (.1.2) Potri.012G043501
[exp]
80.24 0.6424
AT4G32880 HD ATHB8, ATHB-8 homeobox gene 8 (.1) Potri.018G045100
[exp]
87.82 0.5771 HB1.5

Potri.008G040700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.