Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G16670 288 / 2e-95 Protein kinase superfamily protein (.1) AT3G09010 286 / 1e-94 Protein kinase superfamily protein (.1) AT1G56140 283 / 2e-87 Leucine-rich repeat transmembrane protein kinase (.1) AT1G56120 282 / 2e-87 Leucine-rich repeat transmembrane protein kinase (.1) AT1G53420 278 / 3e-86 Leucine-rich repeat transmembrane protein kinase (.1) AT1G56130 279 / 4e-86 Leucine-rich repeat transmembrane protein kinase (.1) AT1G53440 275 / 7e-85 Leucine-rich repeat transmembrane protein kinase (.1) AT1G53430 274 / 1e-84 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G56145 273 / 3e-84 Leucine-rich repeat transmembrane protein kinase (.1.2) AT3G14840 273 / 6e-84 Leucine-rich repeat transmembrane protein kinase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G221400 [exp] 456 / 3e-162 AT1G16670 379 / 9e-131 Protein kinase superfamily protein (.1) Potri.006G128500 [exp] 337 / 4e-115 AT1G16670 353 / 3e-120 Protein kinase superfamily protein (.1) Potri.011G112000 [exp] 314 / 1e-105 AT1G16670 476 / 2e-168 Protein kinase superfamily protein (.1) Potri.011G142100 [exp] 309 / 1e-103 AT1G16670 530 / 0.0 Protein kinase superfamily protein (.1) Potri.001G393200 [exp] 308 / 1e-102 AT1G16670 471 / 2e-165 Protein kinase superfamily protein (.1) Potri.001G438400 [exp] 300 / 3e-100 AT1G16670 529 / 0.0 Protein kinase superfamily protein (.1) Potri.004G040200 [exp] 290 / 2e-96 AT3G09010 436 / 1e-152 Protein kinase superfamily protein (.1) Potri.016G114800 [exp] 281 / 9e-93 AT3G09010 486 / 3e-172 Protein kinase superfamily protein (.1) Potri.011G049600 [exp] 270 / 9e-89 AT3G09010 427 / 2e-149 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040392 [exp] 340 / 3e-115 AT3G09010 323 / 2e-107 Protein kinase superfamily protein (.1) Lus10023510 [exp] 338 / 2e-114 AT1G16670 331 / 1e-110 Protein kinase superfamily protein (.1) Lus10019933 [exp] 332 / 6e-113 AT1G16670 364 / 1e-124 Protein kinase superfamily protein (.1) Lus10026503 [exp] 330 / 3e-112 AT1G16670 369 / 2e-126 Protein kinase superfamily protein (.1) Lus10042460 [exp] 313 / 2e-105 AT1G16670 536 / 0.0 Protein kinase superfamily protein (.1) Lus10026207 [exp] 311 / 3e-104 AT1G16670 541 / 0.0 Protein kinase superfamily protein (.1) Lus10028149 [exp] 296 / 9e-99 AT1G16670 434 / 6e-152 Protein kinase superfamily protein (.1) Lus10042851 [exp] 295 / 5e-98 AT1G16670 429 / 3e-149 Protein kinase superfamily protein (.1) Lus10004825 [exp] 275 / 1e-90 AT3G09010 496 / 5e-176 Protein kinase superfamily protein (.1) Lus10002494 [exp] 272 / 5e-89 AT3G09010 462 / 3e-162 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.008G040800.4 pacid=42806169 polypeptide=Potri.008G040800.4.p locus=Potri.008G040800 ID=Potri.008G040800.4.v4.1 annot-version=v4.1 ATGAAAAACAGCAGTTCCAAGCATCGAAGCAGAAGCACGTTTAGAAGCATGATGAGGCTCTCCTTCTCTTGCTTTAGATGCTTCTCTTCTTCGTCTGACA TCCCCACAGACAATGCACTAATTATGCAAGGTTTGCAAGTTCTTCAAAATGTGCATGCTTTCTCGTTTAATGAGTTGAAAGTCGCCACCAATGGATTCCG TTCATCAAATAAAATTGGGGAAGGCGGATTTGGCTCTGTATATAAGGGAATCCTGCAAGATGGGAGAATGGTTGCCGTCAAAATGCTTTCTGCGGGATCA AAACAAGGAGACAGGGAGTTCATCTCTGAGATAGCTTCAGTGTCCAATATTAACCATGAAAATCTTGTTAAGTTACACGGTGGATGCATTGATGGTCCTT ATAAGATTCTCGTTTATGACTACATGGAAAACGGCAGTCTTGCTCAAACTTTGCTCGGTTCTGAGGAAAAAAGAGCCAACTTCAGGTGGGAAACAAGGAG AGAGATTTCGTTAGGCATTGCTCAAGGTCTTGCTTATATTCACGAGGAGATTAAGCCCCGTATTGTGCATCGAGATATAAAAGCAAGCAATATACTCTTG GATCAGAATTTGTGTCCGAAAGTTTCAGATTTTGGTCTCTCTAAACTATTTCCTGAAGATTTTACTCATGTCAGTACACGAGTGGCTGGCACATTGGGAT ATCTTGCACCGGAATACGCCATTAGTGGCCGTCTGACCCGGAAAACAGACGTGTACAGTTTTGGAGTGCTACTTCTTGAAATAATCTGCGGGCGAAAAGC TGTTGATTTTGATCCAGAACTTGGAGAACACTACCTGGTGGAGAAGGTATTACTGTTTTTTACAAGCTGCAAACAGCAGTCCTTGTCTTATAAAATAGAA TACGCTCTATATATTATTGGGCAACGCCTGGTAATTTATTTATTTTTTATGAAAATCTAA
AA sequence Show only first row Show all	>Potri.008G040800.4 pacid=42806169 polypeptide=Potri.008G040800.4.p locus=Potri.008G040800 ID=Potri.008G040800.4.v4.1 annot-version=v4.1 MKNSSSKHRSRSTFRSMMRLSFSCFRCFSSSSDIPTDNALIMQGLQVLQNVHAFSFNELKVATNGFRSSNKIGEGGFGSVYKGILQDGRMVAVKMLSAGS KQGDREFISEIASVSNINHENLVKLHGGCIDGPYKILVYDYMENGSLAQTLLGSEEKRANFRWETRREISLGIAQGLAYIHEEIKPRIVHRDIKASNILL DQNLCPKVSDFGLSKLFPEDFTHVSTRVAGTLGYLAPEYAISGRLTRKTDVYSFGVLLLEIICGRKAVDFDPELGEHYLVEKVLLFFTSCKQQSLSYKIE YALYIIGQRLVIYLFFMKI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G16670			Protein kinase superfamily pro...		Potri.008G040800 [exp]	0	1
AT1G52570		PLDALPHA2	phospholipase D alpha 2 (.1)		Potri.018G131200 [exp]	5.29	0.9620
AT1G62510			Bifunctional inhibitor/lipid-t...		Potri.001G158400 [exp]	7.00	0.9148	Pt-HPS.2
AT1G80830		ATNRAMP1, PMIT1...	natural resistance-associated ...		Potri.002G080400 [exp]	8.36	0.9461
AT1G12100			Bifunctional inhibitor/lipid-t...		Potri.001G121800 [exp]	10.09	0.9577
AT4G02940			oxidoreductase, 2OG-Fe(II) oxy...		Potri.002G210732 [exp]	12.00	0.8500
AT2G21610		PE11, ATPE11	A. THALIANA PECTINESTERASE 11,...		Potri.004G156300 [exp]	12.48	0.9548
AT4G35270		NLP2	Plant regulator RWP-RK family ...		Potri.009G166666 [exp]	14.69	0.9450
AT5G14650			Pectin lyase-like superfamily ...		Potri.001G346800 [exp]	16.37	0.9510
					Potri.008G031000 [exp]	24.24	0.7592
AT2G23440			unknown protein		Potri.007G041500 [exp]	24.97	0.9394

Compare expression of checked genes

Potri.008G040800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.