Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07950 351 / 1e-121 rhomboid protein-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G220900 [exp] 484 / 3e-174 AT3G07950 352 / 3e-122 rhomboid protein-related (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041408 [exp] 421 / 3e-149 AT3G07950 425 / 6e-151 rhomboid protein-related (.1) Lus10036521 [exp] 420 / 6e-149 AT3G07950 428 / 4e-152 rhomboid protein-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0207 [poplar] [flax] Rhomboid-like PF01694 [poplar] [flax] Rhomboid Rhomboid family
Representative CDS sequence Show only first row Show all	>Potri.008G041100.1 pacid=42808322 polypeptide=Potri.008G041100.1.p locus=Potri.008G041100 ID=Potri.008G041100.1.v4.1 annot-version=v4.1 ATGAGCTCTCCACCCATTCTCGGAGGCGCGAGCTTGTTTACAGGATTCACGAAGCTATGCAAAGGTCTCGCGGTTGTTCTCGTCACCTGTCACATCTTAG TTCAGATTTTACCCCCTGCTGTTAACTATCTTGCTCTTATTCCTGCCAGGACGATTCCTTTTGTATGGAACCTCATAACAGCTGGTTACATTGAACAATC GATATATGGGGTTGTTGCAAGCACTTTATGCCTCCTCATCATGGGAAAGCTTCTTGAGCCAGTATGGGGTTCTAAAGAGTTCTTGAAGTTCATATTCATA GTCAACTTTCTCATTTCCATCTGCGTTTTCATTACTGCTATTAGCTTGTACTACATAACAAGGCAGGAAAATTACCTTTATATGCCTATTTCTGGCTTCC AGGGGATCCTAGCTGGTTTCTTGGTTGGCATTAAGCAAATTATACCAGACCAAGAGCTGTCTCTATTGAGAATAAAGGCTAAGTGGTTTCCATCTCTTAT GCTCTTGATAGCTATTGCTATAAGCTTCTTTACCGCAGAGTCTGCAGCATATCTTCCAACCTTAATATTTGGCACATATATGAGCTGGATTTACTTGAGA TACTTTCAGAGGAAACCAGAAACAAAACTAAGGGGTGATCCAAGTGATGATTTTGCATTCTCATCCTTCTTCCCTGAATCCCTCAGGCCAATCATTGATC CTATTGCATCAATATTCCATCGGATGCTTTGTGGAAGATTTGAAACTTCTACAGAAGCCCATGGTGATACCTTGGGAGATGCTTCATTGCCTGGTTCTGA TCCCATTGAGGCAACTAGGAGGAGAGAAAGGGGAGCTAGAGCATTGGAAGAAAGGTTGGCCACTGCTCCGAGTGCAGAAGAGTTGAAAAGGGATGCCTCG GAGAATGTTTGA
AA sequence Show only first row Show all	>Potri.008G041100.1 pacid=42808322 polypeptide=Potri.008G041100.1.p locus=Potri.008G041100 ID=Potri.008G041100.1.v4.1 annot-version=v4.1 MSSPPILGGASLFTGFTKLCKGLAVVLVTCHILVQILPPAVNYLALIPARTIPFVWNLITAGYIEQSIYGVVASTLCLLIMGKLLEPVWGSKEFLKFIFI VNFLISICVFITAISLYYITRQENYLYMPISGFQGILAGFLVGIKQIIPDQELSLLRIKAKWFPSLMLLIAIAISFFTAESAAYLPTLIFGTYMSWIYLR YFQRKPETKLRGDPSDDFAFSSFFPESLRPIIDPIASIFHRMLCGRFETSTEAHGDTLGDASLPGSDPIEATRRRERGARALEERLATAPSAEELKRDAS ENV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G07950			rhomboid protein-related (.1)		Potri.008G041100 [exp]	0	1
AT1G53290			Galactosyltransferase family p...		Potri.011G111700 [exp]	1.73	0.9723
AT5G41950			Tetratricopeptide repeat (TPR)...		Potri.003G146200 [exp]	3.16	0.9627
AT1G09330		ECHIDNA, ECH	unknown protein		Potri.005G010400 [exp]	3.87	0.9627
AT5G27490			Integral membrane Yip1 family ...		Potri.013G023400 [exp]	4.89	0.9569
AT2G45060			Uncharacterised conserved prot...		Potri.002G142900 [exp]	5.19	0.9432
AT1G64650			Major facilitator superfamily ...		Potri.003G145600 [exp]	5.47	0.9588
AT3G43810		CAM7	calmodulin 7 (.1)		Potri.009G021500 [exp]	5.65	0.9404	Pt-ACCAL.1
AT1G26940			Cyclophilin-like peptidyl-prol...		Potri.010G012900 [exp]	5.74	0.9513
AT5G05010			clathrin adaptor complexes med...		Potri.015G125400 [exp]	6.00	0.9595
AT1G60970			SNARE-like superfamily protein...		Potri.003G043200 [exp]	6.00	0.9582

Compare expression of checked genes

Potri.008G041100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.