Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20060 223 / 7e-75 UBC19 ubiquitin-conjugating enzyme19 (.1.2) AT1G50490 211 / 3e-70 UBC20 ubiquitin-conjugating enzyme 20 (.1) AT2G16740 122 / 1e-35 UBC29 ubiquitin-conjugating enzyme 29 (.1) AT1G16890 117 / 1e-33 UBC36 ,UBC13B UBIQUITIN CONJUGATING ENZYME 13B, ubiquitin-conjugating enzyme 36 (.1.2.3) AT5G53300 116 / 2e-33 UBC10 ubiquitin-conjugating enzyme 10 (.1.2.3.4) AT1G64230 116 / 2e-33 UBC28 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) AT5G62540 116 / 2e-33 UBC3 ubiquitin-conjugating enzyme 3 (.1) AT4G27960 116 / 2e-33 UBC9 ubiquitin conjugating enzyme 9 (.1.2) AT5G56150 115 / 3e-33 UBC30 ubiquitin-conjugating enzyme 30 (.1.2) AT5G41700 115 / 3e-33 ATUBC8, UBC8 ARABIDOPSIS THALIANA UBIQUITIN CONJUGATING ENZYME 8, ubiquitin conjugating enzyme 8 (.1.2.3.4.5)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G220600 [exp] 365 / 6e-131 AT3G20060 216 / 3e-72 ubiquitin-conjugating enzyme19 (.1.2) Potri.009G049600 [exp] 235 / 7e-80 AT3G20060 296 / 3e-104 ubiquitin-conjugating enzyme19 (.1.2) Potri.001G254500 [exp] 231 / 3e-78 AT3G20060 295 / 1e-103 ubiquitin-conjugating enzyme19 (.1.2) Potri.013G064400 [exp] 117 / 1e-33 AT2G02760 313 / 1e-111 ubiquitin-conjugating enzyme 2, ubiquiting-conjugating enzyme 2 (.1) Potri.012G033000 [exp] 116 / 2e-33 AT5G53300 302 / 1e-107 ubiquitin-conjugating enzyme 10 (.1.2.3.4) Potri.015G023300 [exp] 116 / 2e-33 AT5G53300 302 / 1e-107 ubiquitin-conjugating enzyme 10 (.1.2.3.4) Potri.019G131400 [exp] 116 / 2e-33 AT5G41700 304 / 4e-108 ARABIDOPSIS THALIANA UBIQUITIN CONJUGATING ENZYME 8, ubiquitin conjugating enzyme 8 (.1.2.3.4.5) Potri.003G136200 [exp] 116 / 3e-33 AT1G64230 304 / 4e-108 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Potri.011G111400 [exp] 116 / 3e-33 AT1G78870 311 / 1e-110 UBIQUITIN CONJUGATING ENZYME 13A, ubiquitin-conjugating enzyme 35 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005014 [exp] 215 / 6e-72 AT3G20060 292 / 1e-102 ubiquitin-conjugating enzyme19 (.1.2) Lus10019034 [exp] 215 / 6e-72 AT3G20060 292 / 1e-102 ubiquitin-conjugating enzyme19 (.1.2) Lus10017654 [exp] 120 / 7e-35 AT1G16890 311 / 5e-111 UBIQUITIN CONJUGATING ENZYME 13B, ubiquitin-conjugating enzyme 36 (.1.2.3) Lus10033611 [exp] 120 / 7e-35 AT1G16890 311 / 5e-111 UBIQUITIN CONJUGATING ENZYME 13B, ubiquitin-conjugating enzyme 36 (.1.2.3) Lus10027846 [exp] 118 / 3e-34 AT1G64230 289 / 3e-102 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Lus10032352 [exp] 117 / 7e-34 AT5G53300 302 / 2e-107 ubiquitin-conjugating enzyme 10 (.1.2.3.4) Lus10036727 [exp] 117 / 9e-34 AT2G02760 310 / 1e-110 ubiquitin-conjugating enzyme 2, ubiquiting-conjugating enzyme 2 (.1) Lus10037203 [exp] 117 / 9e-34 AT2G02760 310 / 1e-110 ubiquitin-conjugating enzyme 2, ubiquiting-conjugating enzyme 2 (.1) Lus10030786 [exp] 117 / 2e-33 AT2G02760 305 / 2e-108 ubiquitin-conjugating enzyme 2, ubiquiting-conjugating enzyme 2 (.1) Lus10033937 [exp] 117 / 2e-33 AT5G53300 300 / 2e-106 ubiquitin-conjugating enzyme 10 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0208 [poplar] [flax] UBC PF00179 [poplar] [flax] UQ_con Ubiquitin-conjugating enzyme
Representative CDS sequence Show only first row Show all	>Potri.008G041300.1 pacid=42806952 polypeptide=Potri.008G041300.1.p locus=Potri.008G041300 ID=Potri.008G041300.1.v4.1 annot-version=v4.1 ATGGAGGTTAGGCCAAATCAGACGGTTGATAACTCTCCGCAGCATCGGCGTCATGTGCCAGCGACTCCATCAAAGCAACCTGTTGCTCCTTCTAACACAG TTGACACCGCCTCAGTTTCTCAAAGGTTACAGAAGGAATTAATGTCTCTTATGATGATTGGAGGAGATCTTGGAGTGTCAGCTTTTCCTGAAGGTGAGAG CATTTTTGCATGGATTGGCACAATTATGGGTGGAAAGGGAACTGCCTACGAGGGATTATCATACAAGCTTTCTCTGCGTTTTCCTCTAGACTACCCTTTC AAACCACCTCAAGTCAAATTTGAGACGATGTGCTTCCATCCAAATGTTGATCAATTTGGGAACATATGCCTTGATATTCTTCAGGATAAATGGTCTTCAG CGTATGATTGCAGAACCATTCTCTTATCCATTCAAAGTCTATTGGGAGAACCGAACCCAGACAGTCCTCTGAACAACTATGCTGCCAAACTCTGGAATAA CGAGGAAGATTACAAAAGCATGGTCCACAGACAGTATTATGCTGGAGAAGCATTTGAGAGTTGA
AA sequence Show only first row Show all	>Potri.008G041300.1 pacid=42806952 polypeptide=Potri.008G041300.1.p locus=Potri.008G041300 ID=Potri.008G041300.1.v4.1 annot-version=v4.1 MEVRPNQTVDNSPQHRRHVPATPSKQPVAPSNTVDTASVSQRLQKELMSLMMIGGDLGVSAFPEGESIFAWIGTIMGGKGTAYEGLSYKLSLRFPLDYPF KPPQVKFETMCFHPNVDQFGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPDSPLNNYAAKLWNNEEDYKSMVHRQYYAGEAFES

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G20060		UBC19	ubiquitin-conjugating enzyme19...		Potri.008G041300 [exp]	0	1
AT2G04690			Pyridoxamine 5'-phosphate oxid...		Potri.001G470300 [exp]	2.00	0.8317
AT4G00355		ATI2	ATG8-interacting protein 2, un...		Potri.002G160700 [exp]	4.24	0.7956
AT4G15563			unknown protein		Potri.008G204800 [exp]	4.35	0.8383
AT3G61600		ATPOB1	POZ/BTB containin G-protein 1 ...		Potri.014G093700 [exp]	12.00	0.7677	ATPOB1.1
AT2G02710		PLPC, PLPB, PLP...	PAS/LOV PROTEIN C, PAS/LOV PRO...		Potri.008G180700 [exp]	14.28	0.7824
AT3G53690			RING/U-box superfamily protein...		Potri.013G120300 [exp]	17.54	0.7645
AT4G16520		ATG8F	autophagy 8f, Ubiquitin-like s...		Potri.001G122700 [exp]	22.27	0.7764
AT1G04960			Protein of unknown function (D...		Potri.014G160800 [exp]	22.36	0.7801
AT1G23260		MMZ1 ,UEV1A	UBIQUITIN E2 VARIANT 1A, MMS Z...		Potri.008G133900 [exp]	25.21	0.7785
AT1G32230		ATP8, CEO1, RCD...	RADICAL-INDUCED CELL DEATH1, A...		Potri.001G137200 [exp]	25.29	0.7285	CEO1.2

Compare expression of checked genes

Potri.008G041300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.