Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12090 397 / 2e-140 TET6 tetraspanin6 (.1) AT4G23410 369 / 1e-129 TET5 tetraspanin5 (.1) AT3G45600 251 / 6e-83 TET3 tetraspanin3 (.1) AT4G30430 247 / 1e-81 TET9 tetraspanin9 (.1) AT2G23810 245 / 7e-81 TET8 tetraspanin8 (.1) AT4G28050 233 / 4e-76 TET7 tetraspanin7 (.1) AT5G60220 221 / 8e-71 TET4 tetraspanin4 (.1) AT1G18520 207 / 6e-66 TET11 tetraspanin11 (.1) AT5G46700 187 / 2e-58 TRN2, TET1 TORNADO 2, TETRASPANIN 1, Tetraspanin family protein (.1) AT2G19580 184 / 7e-57 TET2 tetraspanin2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G220300 [exp] 532 / 0 AT3G12090 399 / 2e-141 tetraspanin6 (.1) Potri.018G099800 [exp] 261 / 6e-87 AT2G23810 322 / 3e-111 tetraspanin8 (.1) Potri.006G177900 [exp] 253 / 5e-84 AT2G23810 317 / 4e-109 tetraspanin8 (.1) Potri.009G015100 [exp] 251 / 6e-83 AT3G45600 388 / 7e-137 tetraspanin3 (.1) Potri.003G093000 [exp] 212 / 7e-68 AT5G46700 369 / 4e-130 TORNADO 2, TETRASPANIN 1, Tetraspanin family protein (.1) Potri.006G150400 [exp] 195 / 2e-61 AT2G19580 367 / 5e-129 tetraspanin2 (.1) Potri.001G141400 [exp] 191 / 7e-60 AT5G46700 367 / 3e-129 TORNADO 2, TETRASPANIN 1, Tetraspanin family protein (.1) Potri.001G107200 [exp] 187 / 2e-58 AT1G63260 416 / 1e-148 tetraspanin10 (.1.2.3) Potri.015G055700 [exp] 187 / 5e-58 AT1G18520 196 / 6e-62 tetraspanin11 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041411 [exp] 313 / 8e-109 AT4G23410 257 / 5e-87 tetraspanin5 (.1) Lus10008891 [exp] 246 / 3e-81 AT2G23810 377 / 5e-133 tetraspanin8 (.1) Lus10023216 [exp] 246 / 3e-81 AT2G23810 376 / 1e-132 tetraspanin8 (.1) Lus10019965 [exp] 243 / 5e-80 AT2G23810 376 / 1e-132 tetraspanin8 (.1) Lus10038473 [exp] 243 / 6e-80 AT3G45600 446 / 9e-160 tetraspanin3 (.1) Lus10015494 [exp] 239 / 2e-78 AT2G23810 370 / 2e-130 tetraspanin8 (.1) Lus10017336 [exp] 214 / 6e-69 AT5G46700 389 / 5e-138 TORNADO 2, TETRASPANIN 1, Tetraspanin family protein (.1) Lus10001668 [exp] 202 / 4e-64 AT5G46700 384 / 8e-136 TORNADO 2, TETRASPANIN 1, Tetraspanin family protein (.1) Lus10008563 [exp] 198 / 2e-62 AT2G19580 411 / 1e-146 tetraspanin2 (.1) Lus10023338 [exp] 190 / 9e-60 AT3G45600 347 / 1e-121 tetraspanin3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0347 [poplar] [flax] Tetraspannin PF00335 [poplar] [flax] Tetraspanin Tetraspanin family
Representative CDS sequence Show only first row Show all	>Potri.008G041600.1 pacid=42808329 polypeptide=Potri.008G041600.1.p locus=Potri.008G041600 ID=Potri.008G041600.1.v4.1 annot-version=v4.1 ATGTATAGGTTTAGCAACACAGTAATTGGTTTCTTGAATCTTTTCACTCTCTTAGCATCTATACCAATAATTGGTGGAGGTTTATGGATGGCAAGGAGTA GCACAACCTGTGAAAGTTTCCTTCAAACCCCACTTCTTGTCGTAGGTTTCGTTGTCCTTATAATCTCACTAGCTGGCTTCATTGGTGCATGCTTCCATGT AGCATGGGCACTCTGGGTTTACTTGGTAGTCATGCTATTCCTCATTGCAGCCTTAATGGGTTTGACCATATTTGGCTTTGTTGTCACTAGCCAAGGTGGT GGTGTGGAGGTGCCTGGTAGGGTTTATAAGGAGTATAGGATTGAAGATTATTCTCCATGGTTGAGGAATAAAATTAAAGATCCTGATTACTGGAGAACCA TTAGGAGTTGCATACTGGGTTCCAAGACCTGTGCTAAACTTGCCTCTTGGACTCCTCTTGATTATCTTGAGAAAGACATGTCTCCCATACAGTCTGGATG TTGCAAGCCACCAACTTCATGTAACTACAACACGGCAACAGCGGTAGCCCAAGACCCAGACTGCTACAGGTGGAATAACGCCCCAACTTTACTGTGCTAT GAGTGTGATTCATGTAAAGCTGGAGTTCTTGAAGATGTTAGAAGGGACTGGCACAAGCTTTCAGTTCTTAACGTTGTGATGCTGGTGTTTCTGATTGGGA TTTACTCGATAGGATGCTGTGCTTTCCAAAATACGAGAAGGGCTGAGACTGATTACCCGTATGGGGAAAACCGGATGACCAAAGTCCGACCCAGATGGGA TTATTACTGGTGGAGATGGTGGCAGGACAAGAGAGAACAACTTTACTAG
AA sequence Show only first row Show all	>Potri.008G041600.1 pacid=42808329 polypeptide=Potri.008G041600.1.p locus=Potri.008G041600 ID=Potri.008G041600.1.v4.1 annot-version=v4.1 MYRFSNTVIGFLNLFTLLASIPIIGGGLWMARSSTTCESFLQTPLLVVGFVVLIISLAGFIGACFHVAWALWVYLVVMLFLIAALMGLTIFGFVVTSQGG GVEVPGRVYKEYRIEDYSPWLRNKIKDPDYWRTIRSCILGSKTCAKLASWTPLDYLEKDMSPIQSGCCKPPTSCNYNTATAVAQDPDCYRWNNAPTLLCY ECDSCKAGVLEDVRRDWHKLSVLNVVMLVFLIGIYSIGCCAFQNTRRAETDYPYGENRMTKVRPRWDYYWWRWWQDKREQLY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G12090		TET6	tetraspanin6 (.1)		Potri.008G041600 [exp]	0	1
AT5G50710			unknown protein		Potri.012G101800 [exp]	1.41	0.9260
AT5G10970	C2H2ZnF		C2H2 and C2HC zinc fingers sup...		Potri.006G261700 [exp]	3.00	0.9279
AT4G17870		RCAR11, PYR1	regulatory component of ABA re...		Potri.003G091700 [exp]	5.74	0.9111
AT1G03840	C2H2ZnF	MGP	Magpie, C2H2 and C2HC zinc fin...		Potri.017G017100 [exp]	6.00	0.9062
AT2G41480			Peroxidase superfamily protein...		Potri.006G069600 [exp]	11.61	0.8698
AT3G61850	DOF	DAG1, AtDof3,7	dof affecting germination 1, D...		Potri.012G018700 [exp]	15.65	0.8768
AT2G24430	NAC	ANAC039, ANAC03...	Arabidopsis NAC domain contain...		Potri.006G277000 [exp]	17.20	0.9096
AT5G65700		BAM1	BARELY ANY MERISTEM 1, Leucine...		Potri.004G223900 [exp]	19.49	0.8858
AT4G24050			NAD(P)-binding Rossmann-fold s...		Potri.001G086900 [exp]	21.07	0.8919
AT5G60850	DOF	OBP4, AtDof5. 4	OBF binding protein 4 (.1)		Potri.011G054300 [exp]	21.16	0.8912

Compare expression of checked genes

Potri.008G041600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.