Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G35770 609 / 0 SCPL28 serine carboxypeptidase-like 28 (.1) AT3G07990 602 / 0 SCPL27 serine carboxypeptidase-like 27 (.1) AT2G35780 568 / 0 SCPL26 serine carboxypeptidase-like 26 (.1) AT3G02110 503 / 2e-176 SCPL25 serine carboxypeptidase-like 25 (.1) AT4G30610 502 / 4e-176 SCPL24, BRS1 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) AT4G30810 486 / 1e-169 SCPL29 serine carboxypeptidase-like 29 (.1) AT2G24000 480 / 1e-167 SCPL22 serine carboxypeptidase-like 22 (.1.2) AT2G24010 456 / 2e-158 SCPL23 serine carboxypeptidase-like 23 (.1) AT5G23210 444 / 8e-153 SCPL34 serine carboxypeptidase-like 34 (.1.2.3.4) AT3G63470 414 / 2e-141 SCPL40 serine carboxypeptidase-like 40 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G220200 [exp] 863 / 0 AT3G07990 600 / 0.0 serine carboxypeptidase-like 27 (.1) Potri.008G041800 [exp] 631 / 0 AT3G07990 736 / 0.0 serine carboxypeptidase-like 27 (.1) Potri.010G220100 [exp] 625 / 0 AT3G07990 735 / 0.0 serine carboxypeptidase-like 27 (.1) Potri.006G183200 [exp] 513 / 2e-180 AT4G30610 739 / 0.0 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) Potri.018G105700 [exp] 510 / 2e-179 AT4G30610 710 / 0.0 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) Potri.018G103100 [exp] 508 / 2e-178 AT4G30810 682 / 0.0 serine carboxypeptidase-like 29 (.1) Potri.017G094100 [exp] 507 / 3e-178 AT3G02110 758 / 0.0 serine carboxypeptidase-like 25 (.1) Potri.004G120100 [exp] 494 / 3e-173 AT3G02110 755 / 0.0 serine carboxypeptidase-like 25 (.1) Potri.005G091700 [exp] 452 / 2e-156 AT5G23210 652 / 0.0 serine carboxypeptidase-like 34 (.1.2.3.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041412 [exp] 679 / 0 AT2G35770 580 / 0.0 serine carboxypeptidase-like 28 (.1) Lus10023505 [exp] 599 / 0 AT3G07990 717 / 0.0 serine carboxypeptidase-like 27 (.1) Lus10040387 [exp] 597 / 0 AT3G07990 715 / 0.0 serine carboxypeptidase-like 27 (.1) Lus10015382 [exp] 491 / 3e-171 AT3G02110 731 / 0.0 serine carboxypeptidase-like 25 (.1) Lus10015489 [exp] 478 / 2e-166 AT4G30610 726 / 0.0 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) Lus10019954 [exp] 475 / 3e-165 AT4G30610 720 / 0.0 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) Lus10010190 [exp] 424 / 2e-145 AT5G23210 647 / 0.0 serine carboxypeptidase-like 34 (.1.2.3.4) Lus10017391 [exp] 420 / 2e-143 AT5G23210 642 / 0.0 serine carboxypeptidase-like 34 (.1.2.3.4) Lus10037810 [exp] 394 / 1e-133 AT3G17180 565 / 0.0 serine carboxypeptidase-like 33 (.1) Lus10010191 [exp] 387 / 8e-131 AT5G23210 476 / 2e-165 serine carboxypeptidase-like 34 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF00450 [poplar] [flax] Peptidase_S10 Serine carboxypeptidase
Representative CDS sequence Show only first row Show all	>Potri.008G041700.1 pacid=42807463 polypeptide=Potri.008G041700.1.p locus=Potri.008G041700 ID=Potri.008G041700.1.v4.1 annot-version=v4.1 ATGCGCATCAAGAGCTCCTCTTGCTTTCTCTTCTCTGTCTTGAATTTTGCTATTCTCTTGCTTTCTACTCCTGCAGTCACCACTCATGATCACCTTGAAG AGCAGAGGAGGGATAGGATTATGAAGCTACCAGGGCAACCACCAAATGTGAGCTTCTCTCAATTCTCCGGCTACATCACTGTAGACCCAGTGGAAGGTAG GGCCCTCTTTTATTGGTTGATTGAGGCCCCCAAGACTGTCAAGCCCAGATCTAAGCCACTAGTTTTATGGCTCAATGGCGGGCCAGGTTGCTCATCTGTG GCCTATGGAGCTTCAGAGGAGGTCGGCCCATTTAGGGTCCGACCCGATGGCGAGACCCTTCATTTGAATCCATATGCTTGGAATAAAGTGGCAAATTTGC TGTTTCTTGATTCACCTGCTGGAGTGGGATTTTCTTATTCAAATACTTCATCGGATATATACACGGTTGGTGACGAGAGGACAGCCGAAGATGCCTACAC ATTTCTGATTAACTGGCTTGAAAGGTTCCCTCGATACAAGCACAGGTCCTTTTACATTGCTGGAGAAAGCTATGCAGGCCATTACATTCCTGAGCTGTCA CGGATTATAGCCCGGAGAAATAAGGGGGTCAAGAATCCTGTCATTAATTTTATAGGTTTCTTGTTAGGCAATCCGCTCTTGGATGATTATCATGATAACA CTGGCACGCACGAGTTCTGGTGGAACCATGGATTGATATCCGATTCCACTTATGAAGATTTAAAGAAGTTCTGCCCAAATAATTCGTTCTTGTTCCCTCG GAATGAATGTTACGGTGCTTTAGAGAGGGCATATTCGGAGTTTGGAGATATCAATCCTTATAGCATTTACAGCCCTCCTTGCAATGTAATCAGTACTCTT AGACACAATCTAAAGCATTCACTGCCTTGGAAATTCAGAGGAAATGACGAGTGTGTGGTGATGTACACAAAAAGATACATGAACCGTCCAGAGGTGCAAA AGGCTCTTCACGCCAACATCACCAGGGTTCCTCATCCTTGGGTCACTTGCAGTTCTATTGTTAGGAGCAATTGGAGTGATTCTCCTAAATCCATGTTGCC AATCTTCAAAGAACTCATAGCAGCTGGTATTAGAATATGGGTTTTCAGTGGTGATGCAGATGCAATTTTGCCACTTACTGCGACCAGATACTCCATTAAT GCTCTACAGCTTGAGACCAACACAAGCTGGTATGCTTGGTATGATGACCATCAACAGGTTGGTGGCTGGAGCCAAGTTTACAAGGGCTTGACCTATGTGA CAGTAAGGGGAGCAGGGCATGAAGTGCCTTTGACTCAGCCTCGACTTGCTTTATTGCTATTTAGGCAATTTCTGAAAAATGAACCCATGCCAGCACTTTA G
AA sequence Show only first row Show all	>Potri.008G041700.1 pacid=42807463 polypeptide=Potri.008G041700.1.p locus=Potri.008G041700 ID=Potri.008G041700.1.v4.1 annot-version=v4.1 MRIKSSSCFLFSVLNFAILLLSTPAVTTHDHLEEQRRDRIMKLPGQPPNVSFSQFSGYITVDPVEGRALFYWLIEAPKTVKPRSKPLVLWLNGGPGCSSV AYGASEEVGPFRVRPDGETLHLNPYAWNKVANLLFLDSPAGVGFSYSNTSSDIYTVGDERTAEDAYTFLINWLERFPRYKHRSFYIAGESYAGHYIPELS RIIARRNKGVKNPVINFIGFLLGNPLLDDYHDNTGTHEFWWNHGLISDSTYEDLKKFCPNNSFLFPRNECYGALERAYSEFGDINPYSIYSPPCNVISTL RHNLKHSLPWKFRGNDECVVMYTKRYMNRPEVQKALHANITRVPHPWVTCSSIVRSNWSDSPKSMLPIFKELIAAGIRIWVFSGDADAILPLTATRYSIN ALQLETNTSWYAWYDDHQQVGGWSQVYKGLTYVTVRGAGHEVPLTQPRLALLLFRQFLKNEPMPAL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G35770		SCPL28	serine carboxypeptidase-like 2...		Potri.008G041700 [exp]	0	1
AT3G07990		SCPL27	serine carboxypeptidase-like 2...		Potri.010G220200 [exp]	1.41	0.9572
AT1G08090		LIN1, ACH1, NRT...	LATERAL ROOT INITIATION 1, nit...		Potri.009G008500 [exp]	3.00	0.9380	PtNtr2-4,Pt-NRT2.7
AT1G28130		GH3.17	Auxin-responsive GH3 family pr...		Potri.001G069000 [exp]	4.47	0.9380	7
AT4G22880		TT18, TDS4, ANS...	TANNIN DEFICIENT SEED 4, ANTHO...		Potri.003G119100 [exp]	4.89	0.9342	Pt-ANS.2
AT4G37710			VQ motif-containing protein (....		Potri.014G006400 [exp]	7.93	0.9303
AT5G58860		CYP86A1	"cytochrome P450, family 86, s...		Potri.009G043700 [exp]	12.64	0.9330	CYP86A19,Pt-CYP86.4
AT3G13790		ATCWINV1, ATBFR...	ARABIDOPSIS THALIANA CELL WALL...		Potri.006G227400 [exp]	16.79	0.9326	Pt-CWINV.1
AT1G05260		RCI3A, RCI3	RARE COLD INDUCIBLE GENE 3, Pe...		Potri.007G122100 [exp]	18.33	0.9255	SEPA1.1
AT1G78780			pathogenesis-related family pr...		Potri.001G389400 [exp]	18.38	0.9181
AT4G20390			Uncharacterised protein family...		Potri.011G154900 [exp]	22.44	0.9236

Compare expression of checked genes

Potri.008G041700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.