Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60410 775 / 0 ATSIZ1, SIZ1 DNA-binding protein with MIZ/SP-RING zinc finger, PHD-finger and SAP domain (.1.2.3.4.5) AT5G41580 62 / 1e-09 RING/U-box superfamily protein (.1) AT1G08910 45 / 0.0002 EMB3001 zinc ion binding;zinc ion binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G219600 [exp] 1436 / 0 AT5G60410 732 / 0.0 DNA-binding protein with MIZ/SP-RING zinc finger, PHD-finger and SAP domain (.1.2.3.4.5) Potri.004G210200 [exp] 831 / 0 AT5G60410 1146 / 0.0 DNA-binding protein with MIZ/SP-RING zinc finger, PHD-finger and SAP domain (.1.2.3.4.5) Potri.009G015000 [exp] 820 / 0 AT5G60410 1148 / 0.0 DNA-binding protein with MIZ/SP-RING zinc finger, PHD-finger and SAP domain (.1.2.3.4.5) Potri.003G133000 [exp] 64 / 5e-10 AT5G41580 466 / 1e-151 RING/U-box superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038464 [exp] 699 / 0 AT5G60410 1006 / 0.0 DNA-binding protein with MIZ/SP-RING zinc finger, PHD-finger and SAP domain (.1.2.3.4.5) Lus10023344 [exp] 666 / 0 AT5G60410 928 / 0.0 DNA-binding protein with MIZ/SP-RING zinc finger, PHD-finger and SAP domain (.1.2.3.4.5) Lus10036123 [exp] 645 / 0 AT5G60410 913 / 0.0 DNA-binding protein with MIZ/SP-RING zinc finger, PHD-finger and SAP domain (.1.2.3.4.5) Lus10011634 [exp] 596 / 0 AT5G60410 847 / 0.0 DNA-binding protein with MIZ/SP-RING zinc finger, PHD-finger and SAP domain (.1.2.3.4.5)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0306 [poplar] [flax] HeH PF02037 [poplar] [flax] SAP SAP domain CL0229 [poplar] [flax] RING PF02891 [poplar] [flax] zf-MIZ MIZ/SP-RING zinc finger
Representative CDS sequence Show only first row Show all	>Potri.008G042300.10 pacid=42806958 polypeptide=Potri.008G042300.10.p locus=Potri.008G042300 ID=Potri.008G042300.10.v4.1 annot-version=v4.1 ATGGAGATGGATTCGATGGCTAGCTGCAAGGAAAAGTTGGCATATTTTAGAATTAAAGAGCTTAAGGATATTTTATCTCTGTTGGGTCTTTCAAAGCAAG GGAAGAAGCAGGATCTAATGGACAGAGTTATAGGTTTGCTCTCGGACGATGAAATTTGCTCTGCTCGCCGCTTAGCAAGGAAAAAGCAGATTGGAAAGGA AGCTGTAGTGAAAATAATTGATGATGCTTACAGAAAAATGCAGATAATGGATGCATCAGATTTAGCAGCCAAGGCTCCAAGTGGCTTAGATATTACGAGT GTCACAGAAGAAGTTGAAGATTTCATTACTCCGGGGAAGACGATTCGTTGTCCTTGTGGAAGTTCGCTGCCTACCGAGTTCATGATACAGTGTATAGATT CAAAATGTCAAGTACAGCAACATATTAGTTGTGTCATTTTTACAGAGATCCCTATGGAGAGTGAACATCCACCTGTATTTTACTGTGAAACATGTCGAAT TGAACGAGCAGATCCGTTCTGGGTTACTGTGGCACATTTATTATTTCCTGTGAAGTTACCGAGTTCAAATATTTCAATAGATGGTAATAACACATTGCAG AATGTGGAAACAACATTTCAGTTGACAAGATCAGATCAACACCTACTAAAGAATTGTGAATATGACGCTCAGGCTTGGTGCATGCTTCTCAACGATAAAG TTTTGTTTAGGATGCAGTGGCCACTTTATGCAGATTTACAGGTTAATGGTATGCCTGTGAAAACGCTTAATAGACCGGGATCACAATCTCTGGGTGCCAG TGGCCGTGATGATGGTGCCCTAATCAAATCATGCATTGGAGAGGGAATCAATAGAGTTTCTTTATCTGGATGTGATTCTCGTGCTTTCTGCTTTGGCATT AGACTCGTAAAGCGACAAACAGTTGAACAGGTTCTCAACCTGATTCCTAAAGATGGTGAGCCTTTTGAAGATGCACTTGCTCGTGTTTGTCGTTGCATTG GTGGTGGGATGGGTGCCTCAAACGAAGATAGTGATAGCGATCTGGAGGTGATTGCAGAAGCAATTATAGTTAATCTCCGCTGTCCTATGAGTGGCTCTAG AATGAAGATTGCTGGCAGATTTAAACCTTGTGTTCACATGGGCTGTTTTGATCTTGAAACTTTTGTGAAACTAAATCAACGCTCGCGCAAGTGGCAGTGT CCCATTTGTCTTAAGAACTACTCCTTGGAGGATATTGTCATTGATCCTTACTTCAACCGCATTACGACAATGATGGGTCATTGTGAAGAAGACATAACTG ATATTGAGGTGAAACCTGATGGTTCCTGGACTGCAAAGACCAAAGTTGAGATTGGTGATCTTGGGCAATGGCATTTTCCCGATGGTTCTCTTTGTGCTTT TATGGATGAAGTTACTTCCTGTTATGAAATCTCAAGGCAGATTGAGAAGGGAGATGGCTTGAAAGCACATGGTAGTCCTGAAATCGGAATTAAGAGTAAT TTCGGTGGAATGATGCAAGGAAGAAAACATCAGCTTGCTTTTTGTTCCTCGAAGAATCAAATTGAGGGAAATTTTGTGAATCAAGGGCAAAGGACAAAAA CAATGAGCAGTAGCATCACTGGAAGTAGCAAATACGAAGAGGACCCAAGTATAAACCAGGATTACAGTGGGCATGTTGAAATATCTCCCAGTAATGTCAA TGAGATCAACTCTATTTGTCATTATTTTGACCCAACACTTGCAATAAACAATGGTAGTTTTGTGCCATCAAGGAATGCTGACATCATTGTTCTTAGCGAT TCTGATGAAGAGAATGTCAATTTAGTTCCTCCTGAAACCGTCTATGATACTTGCCCAGTAGATGGGAGTTGTTCTTCATTGGTTGCCAATCCTGGAATAG CAGACTCATACTTGGAAGATCTAGCACTTGATGCAGGTGCTGATTCTTGTTTTGATCTCTTCGATACAGGTGTGAATGATGTTGGGATGTCCAGCTGGTC CTTTTCTTCTGGTATTCAAGCTGGTGCCCATTTCCAACTATTTAATACGGACTCAGATGTATCAGATGCTTTTATTGATCTGGAGCATTCTTCCATCAGT TGTGCTGCTCCAATGAATGGTAGCACATTGGCATCAACGCCAACTATAACTTCTGGCGGTGAAGTCCCAGATTCTTTGGCCTGTGTTGCCAATGTTGATA TGGATGTTGGCTTGGTTGATAATCCAATGAGATTTGTTAGTGAGGACCCCTCATTACAAACATTTCTCCCAACTCAACCTGTGCAGCCTGACTTGGTAAT CCAGCCTCCTGTATCTAATCCTGTCCCTACTGAGGATTGGATTTCCCTTAGGCTTGGCAGCACCAATGAGAGTTTTGGCAGTCACACCATGGATCGACCG CACCGTGCTGCCAGAGATGGGGTAGATTTGAGAAACCAGTTAGGATTAAATCAAGGTGTTAACTTTGGGGCCTTTGCAGCTACTTCAGTTGCAGCTCTAA ATGATGAAGCTAGGTCTAATGGGAAATATAACAAGAAAATTTCAGATGGCCCTTTCTCATTTCCTCGCCAGCCACGGTCGGTGAGACAACGTGTTTATTC TCAATAG
AA sequence Show only first row Show all	>Potri.008G042300.10 pacid=42806958 polypeptide=Potri.008G042300.10.p locus=Potri.008G042300 ID=Potri.008G042300.10.v4.1 annot-version=v4.1 MEMDSMASCKEKLAYFRIKELKDILSLLGLSKQGKKQDLMDRVIGLLSDDEICSARRLARKKQIGKEAVVKIIDDAYRKMQIMDASDLAAKAPSGLDITS VTEEVEDFITPGKTIRCPCGSSLPTEFMIQCIDSKCQVQQHISCVIFTEIPMESEHPPVFYCETCRIERADPFWVTVAHLLFPVKLPSSNISIDGNNTLQ NVETTFQLTRSDQHLLKNCEYDAQAWCMLLNDKVLFRMQWPLYADLQVNGMPVKTLNRPGSQSLGASGRDDGALIKSCIGEGINRVSLSGCDSRAFCFGI RLVKRQTVEQVLNLIPKDGEPFEDALARVCRCIGGGMGASNEDSDSDLEVIAEAIIVNLRCPMSGSRMKIAGRFKPCVHMGCFDLETFVKLNQRSRKWQC PICLKNYSLEDIVIDPYFNRITTMMGHCEEDITDIEVKPDGSWTAKTKVEIGDLGQWHFPDGSLCAFMDEVTSCYEISRQIEKGDGLKAHGSPEIGIKSN FGGMMQGRKHQLAFCSSKNQIEGNFVNQGQRTKTMSSSITGSSKYEEDPSINQDYSGHVEISPSNVNEINSICHYFDPTLAINNGSFVPSRNADIIVLSD SDEENVNLVPPETVYDTCPVDGSCSSLVANPGIADSYLEDLALDAGADSCFDLFDTGVNDVGMSSWSFSSGIQAGAHFQLFNTDSDVSDAFIDLEHSSIS CAAPMNGSTLASTPTITSGGEVPDSLACVANVDMDVGLVDNPMRFVSEDPSLQTFLPTQPVQPDLVIQPPVSNPVPTEDWISLRLGSTNESFGSHTMDRP HRAARDGVDLRNQLGLNQGVNFGAFAATSVAALNDEARSNGKYNKKISDGPFSFPRQPRSVRQRVYSQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G60410		ATSIZ1, SIZ1	DNA-binding protein with MIZ/S...		Potri.008G042300 [exp]	0	1
AT2G04880	WRKY	ATWRKY1, ZAP1	zinc-dependent activator prote...		Potri.002G221600 [exp]	1.00	0.9384
AT4G20325			unknown protein		Potri.006G280600 [exp]	2.82	0.9229
AT4G01810			Sec23/Sec24 protein transport ...		Potri.002G187100 [exp]	3.46	0.9159
AT1G73100		SDG19, SUVH3	SET DOMAIN PROTEIN 19, SU(VAR)...		Potri.001G036800 [exp]	5.47	0.8910	SUVH3.4,SDG950
AT5G49840			ATP-dependent Clp protease (.1...		Potri.004G229400 [exp]	6.00	0.9140
AT5G17370			Transducin/WD40 repeat-like su...		Potri.003G155900 [exp]	6.00	0.8887
AT3G14470			NB-ARC domain-containing disea...		Potri.019G036850 [exp]	6.48	0.8892
AT1G65540			LETM1-like protein (.1)		Potri.010G178400 [exp]	6.48	0.8660
AT5G45190			Cyclin family protein (.1.2)		Potri.007G067100 [exp]	8.94	0.8884
AT4G26700		ATFIM1	ARABIDOPSIS THALIANA FIMBRIN 1...		Potri.011G086500 [exp]	9.16	0.8728	FIM1.1

Compare expression of checked genes

Potri.008G042300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.