Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	ATS9.3
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29150 611 / 0 RPN6, ATS9 REGULATORY PARTICLE NON-ATPASE 6, non-ATPase subunit 9 (.1) AT2G26990 56 / 3e-08 COP12, ATCSN2, FUS12 FUSCA 12, CONSTITUTIVE PHOTOMORPHOGENIC 12, proteasome family protein (.1) AT3G61140 44 / 0.0001 EMB78, CSN1, COP11, ATFUS6, FUS6, ATSK31 EMBRYO DEFECTIVE 78, COP9 SIGNALOSOME SUBUNIT 1, CONSTITUTIVE PHOTOMORPHOGENIC 11, SHAGGY-LIKE KINASE 31, ARABIDOPSIS THALIANA FUSCA 6, 26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G020300 [exp] 685 / 0 AT1G29150 634 / 0.0 REGULATORY PARTICLE NON-ATPASE 6, non-ATPase subunit 9 (.1) Potri.010G164200 [exp] 684 / 0 AT1G29150 634 / 0.0 REGULATORY PARTICLE NON-ATPASE 6, non-ATPase subunit 9 (.1) Potri.006G277900 [exp] 506 / 1e-178 AT1G29150 498 / 1e-175 REGULATORY PARTICLE NON-ATPASE 6, non-ATPase subunit 9 (.1) Potri.001G222700 [exp] 62 / 2e-10 AT2G26990 772 / 0.0 FUSCA 12, CONSTITUTIVE PHOTOMORPHOGENIC 12, proteasome family protein (.1) Potri.009G020900 [exp] 62 / 2e-10 AT2G26990 815 / 0.0 FUSCA 12, CONSTITUTIVE PHOTOMORPHOGENIC 12, proteasome family protein (.1) Potri.002G154500 [exp] 45 / 6e-05 AT3G61140 681 / 0.0 EMBRYO DEFECTIVE 78, COP9 SIGNALOSOME SUBUNIT 1, CONSTITUTIVE PHOTOMORPHOGENIC 11, SHAGGY-LIKE KINASE 31, ARABIDOPSIS THALIANA FUSCA 6, 26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037125 [exp] 671 / 0 AT1G29150 721 / 0.0 REGULATORY PARTICLE NON-ATPASE 6, non-ATPase subunit 9 (.1) Lus10036805 [exp] 666 / 0 AT1G29150 718 / 0.0 REGULATORY PARTICLE NON-ATPASE 6, non-ATPase subunit 9 (.1) Lus10008632 [exp] 664 / 0 AT1G29150 721 / 0.0 REGULATORY PARTICLE NON-ATPASE 6, non-ATPase subunit 9 (.1) Lus10042184 [exp] 415 / 3e-144 AT1G29150 425 / 2e-148 REGULATORY PARTICLE NON-ATPASE 6, non-ATPase subunit 9 (.1) Lus10029167 [exp] 79 / 4e-18 AT1G29150 77 / 1e-18 REGULATORY PARTICLE NON-ATPASE 6, non-ATPase subunit 9 (.1) Lus10012998 [exp] 67 / 1e-13 ND 44 / 4e-06 Lus10041295 [exp] 58 / 7e-09 AT2G26990 798 / 0.0 FUSCA 12, CONSTITUTIVE PHOTOMORPHOGENIC 12, proteasome family protein (.1) Lus10037417 [exp] 58 / 7e-09 AT2G26990 799 / 0.0 FUSCA 12, CONSTITUTIVE PHOTOMORPHOGENIC 12, proteasome family protein (.1) Lus10041364 [exp] 43 / 0.0004 AT3G61140 708 / 0.0 EMBRYO DEFECTIVE 78, COP9 SIGNALOSOME SUBUNIT 1, CONSTITUTIVE PHOTOMORPHOGENIC 11, SHAGGY-LIKE KINASE 31, ARABIDOPSIS THALIANA FUSCA 6, 26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain (.1) Lus10036566 [exp] 42 / 0.0005 AT3G61140 709 / 0.0 EMBRYO DEFECTIVE 78, COP9 SIGNALOSOME SUBUNIT 1, CONSTITUTIVE PHOTOMORPHOGENIC 11, SHAGGY-LIKE KINASE 31, ARABIDOPSIS THALIANA FUSCA 6, 26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF01399 [poplar] [flax] PCI PCI domain
Representative CDS sequence Show only first row Show all	>Potri.008G042400.1 pacid=42806581 polypeptide=Potri.008G042400.1.p locus=Potri.008G042400 ID=Potri.008G042400.1.v4.1 annot-version=v4.1 ATGTCAACCTCGTATCTCCCTGCAACTACGGATTCAATTGCTCAGGCTTTAGAGGCGAAAAATCCATCTGAATCCATTTCAATCTTTTACCGCATACTAG AGAGCCCATCATCTTCTCCTGAATCCCTCAGGATTAAGGAACAGTCCATCACGAATCTCTCAGATCTTCTTAGACAGGAGAACCGGGCAGAGGAGCTTCG AAGCCTTCTGACCCAGCTGAGGCCCTTTTTTGCATTGATTCCCAAGGCAAAAACTGCAAAAATTGTTCGTGGGATAATTGATGCGGTAGCTAAAATACCA GGCACTTCTGATCTCCAGATTTCTCTGTGCAAAGAGATGGTGCAGTGGACCCGTGCTGAGAAGCGAACTTTTCTTCGGCAGCGAGTTGAAGCAAGACTGG CAGCCCTATTGATGGAAAGTAAAGAGTATTCAGAAGCATTAAACCTGCTTTCTGGCCTGATCAAGGAGGTGAGAAGATTGGATGACAAGCTTCTTCTTGT GGACATAGACTTGCTGGAGAGTAAGCTCCACTTTTCTCTAAGAAACCTCCCTAAAGCCAAGGCTGCACTAACAGCAGCAAGAACAGCAGCCAATGCAATT TATGTGCCACCAGCTCAACAGGGTACTATAGATTTGCAGAGCGGGATCCTTCATGCAGAAGAGAAGGATTACAAAACTGGTTACAGCTACTTCTTCGAGG CATTTGAAGCTTTCAATGCTCTTGAAGATCCCCGAGCGGTATTTAGCCTCAAGTATATGTTGTTGTGCAAAATAATGGTGAGCCAAGCTGATGATGTTGC AGGAATAATATCATCCAAAGCAGGGCTACAGTATGTGGGGCCTGAGCTGGATGCAATGAAAGCTGTTGCTGATGCTCATTCGAAACGCTCCTTAAAGCTC TTTGAGACTGCACTTAGGGATTTTAAAGCCCAACTAGAGGAAGATCCAATTGTTCATCGGCATCTCTCATCCCTATATGACACTTTACTAGAGCAGAACC TTTGCAGGTTGATCGAGCCATTCTCAAGGGTTGAGATTGCTCACATTGCAGATCTGATTGAACTGCCCATAGATCACGTGGAAAAGAAACTATCTCAGAT GATTCTGGATAAAAAATTTGCTGGGACTTTAGACCAAGGTGCTGGATGCCTCGTCATTTTTGATGATCCAAAAACAGATGCGATCTACCCAGCTACGTTG GAGACCATTTCCAATGTTGGCAAGGTTGTTGATAGCCTCTACGTGAGGTCCGCCAAGATTATGGCTTAA
AA sequence Show only first row Show all	>Potri.008G042400.1 pacid=42806581 polypeptide=Potri.008G042400.1.p locus=Potri.008G042400 ID=Potri.008G042400.1.v4.1 annot-version=v4.1 MSTSYLPATTDSIAQALEAKNPSESISIFYRILESPSSSPESLRIKEQSITNLSDLLRQENRAEELRSLLTQLRPFFALIPKAKTAKIVRGIIDAVAKIP GTSDLQISLCKEMVQWTRAEKRTFLRQRVEARLAALLMESKEYSEALNLLSGLIKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAI YVPPAQQGTIDLQSGILHAEEKDYKTGYSYFFEAFEAFNALEDPRAVFSLKYMLLCKIMVSQADDVAGIISSKAGLQYVGPELDAMKAVADAHSKRSLKL FETALRDFKAQLEEDPIVHRHLSSLYDTLLEQNLCRLIEPFSRVEIAHIADLIELPIDHVEKKLSQMILDKKFAGTLDQGAGCLVIFDDPKTDAIYPATL ETISNVGKVVDSLYVRSAKIMA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G29150		RPN6, ATS9	REGULATORY PARTICLE NON-ATPASE...		Potri.008G042400 [exp]	0	1	ATS9.3
AT4G31180			Class II aminoacyl-tRNA and bi...		Potri.006G085400 [exp]	1.00	0.7907
AT3G05530		ATS6A.2, RPT5A	regulatory particle triple-A A...		Potri.013G016800 [exp]	3.16	0.7821	RPT5.2
AT5G07960			unknown protein		Potri.012G065500 [exp]	4.89	0.7476
AT5G05920		DHS, EDA22	embryo sac development arrest ...		Potri.003G186900 [exp]	6.70	0.7598
AT1G34760		RHS5, GF14OMICR...	ROOT HAIR SPECIFIC 5, general ...		Potri.005G164500 [exp]	7.48	0.7329
AT4G15770			RNA binding (.1)		Potri.010G024400 [exp]	8.36	0.7429
AT1G29150		RPN6, ATS9	REGULATORY PARTICLE NON-ATPASE...		Potri.010G164200 [exp]	8.48	0.7378	ATS9.1
AT1G06110		SKIP16	SKP1/ASK-interacting protein 1...		Potri.017G027000 [exp]	8.77	0.7063
AT5G03290		IDH-V	isocitrate dehydrogenase V (.1...		Potri.016G091200 [exp]	12.96	0.6971
AT5G58290		RPT3	regulatory particle triple-A A...		Potri.016G028000 [exp]	13.96	0.6962	RPT1.2

Compare expression of checked genes

Potri.008G042400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.