Plant FIBer expression Database

Potri.008G042800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G35790 232 / 9e-77 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G219400
[exp]
377 / 5e-134 AT2G35790 243 / 2e-81 unknown protein
Potri.010G219000
[exp]
332 / 8e-116 AT2G35790 239 / 3e-79 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10023498
[exp]
241 / 3e-80 AT2G35790 282 / 2e-96 unknown protein
Lus10040379
[exp]
214 / 1e-69 AT2G35790 266 / 3e-90 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF06979 TMEM70 Assembly, mitochondrial proton-transport ATP synth complex
Representative CDS sequence
>Potri.008G042800.1 pacid=42805884 polypeptide=Potri.008G042800.1.p locus=Potri.008G042800 ID=Potri.008G042800.1.v4.1 annot-version=v4.1
ATGGCGAGGGGAGCAGCTCTTCTTCACTTGCTTCGATCTCAAACCAAACAATTCTCAGCCAGCAGAAACTTCCACTCAGGCTATCATCCTTGTCAGTTTG
GCACATGGTCACACAGTCTGTGCGCCAAATCCAACTTCAACCATGACACTCTTCTTGCTGCTACTCAGAAAAGATGGGCATCTCAAGCTAAAACAACAGA
AGATGACAATAAGATCAGCATTGGACCCCGTGGAGGGAAGGAAGTGGGGCAGGATGAAAAAGAGACTGGGGTAGTATATTATGGTCCGATCTCATCCACC
GTCAAGAAAGTAAAATTGCTCTCTCTTTCAACCTGCTGCCTGTCCGTATCCTTGGGTCCTGTCATAACTTTTATGACATCTCAAGACTCAAATGTCATCC
TGAAGGGGGCAGTTGCTTCTTCTGTCATATTCTTTAGTGCTTCGACCACTGCTGCTCTACACTGGTTTGTTAGCCCTTACATCCACAAGCTTAGATGGCA
GCCTGGCTCAGACAGTTTTGAAGTGGAGATGATGTCCTGGTTGGGAATCTACATTCCAAAGACTATCAAATTTGCTGATATCCGGCCTCCAGAAACCAAC
AGGCCTTTTGTGACATTTAAGGCCAACGGAAATTTCTACTTTGTTGATGCAGAGCACTGTCATAACAAGGCATTGTTGAATAGACTGACCCCCAAAAAAT
CTGCTCACGAGTCTGCTTTCAAAAATCTGTGA
AA sequence
>Potri.008G042800.1 pacid=42805884 polypeptide=Potri.008G042800.1.p locus=Potri.008G042800 ID=Potri.008G042800.1.v4.1 annot-version=v4.1
MARGAALLHLLRSQTKQFSASRNFHSGYHPCQFGTWSHSLCAKSNFNHDTLLAATQKRWASQAKTTEDDNKISIGPRGGKEVGQDEKETGVVYYGPISST
VKKVKLLSLSTCCLSVSLGPVITFMTSQDSNVILKGAVASSVIFFSASTTAALHWFVSPYIHKLRWQPGSDSFEVEMMSWLGIYIPKTIKFADIRPPETN
RPFVTFKANGNFYFVDAEHCHNKALLNRLTPKKSAHESAFKNL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G35790 unknown protein Potri.008G042800
[exp]
0 1
AT5G17600 RING/U-box superfamily protein... Potri.006G144200
[exp]
3.00 0.8702
AT5G19875 unknown protein Potri.001G009200
[exp]
3.46 0.8915
AT2G31130 unknown protein Potri.004G055300
[exp]
6.32 0.8755
AT1G75540 CO LHUS, AtBBX21, ... long hypocotyl under shade, B-... Potri.002G028200
[exp]
7.48 0.8861 Pt-COL6.2
AT1G02930 ATGST1, GST1, E... EARLY RESPONSIVE TO DEHYDRATIO... Potri.002G207479
[exp]
8.24 0.8307
AT3G62240 C2H2ZnF RING/U-box superfamily protein... Potri.005G004600
[exp]
9.38 0.8633
AT3G52850 VSR1;1, GFS1, B... VACUOLAR SORTING RECEPTOR 1;1,... Potri.016G137300
[exp]
10.00 0.8465
Potri.008G019900
[exp]
10.48 0.8660
AT1G07985 Expressed protein (.1) Potri.001G266500
[exp]
10.81 0.7848
AT1G59530 bZIP ATBZIP4 basic leucine-zipper 4 (.1) Potri.002G115900
[exp]
11.48 0.8624

Potri.008G042800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.