Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34900 341 / 2e-115 GTE1, GTE01, IMB1 IMBIBITION-INDUCIBLE 1, GLOBAL TRANSCRIPTION FACTOR GROUP E1, Transcription factor GTE6 (.1.2) AT3G52280 336 / 1e-113 GTE6 general transcription factor group E6 (.1.2) AT1G06230 109 / 9e-26 GTE4 global transcription factor group E4 (.1.2.3) AT5G10550 109 / 9e-26 GTE2 global transcription factor group E2 (.1) AT5G14270 104 / 4e-24 ATBET9 bromodomain and extraterminal domain protein 9 (.1.2) AT1G73150 103 / 4e-24 GTE3 global transcription factor group E3 (.1) AT3G27260 99 / 3e-22 GTE8 global transcription factor group E8 (.1.2) AT5G65630 97 / 7e-22 GTE7 global transcription factor group E7 (.1) AT1G17790 97 / 8e-22 DNA-binding bromodomain-containing protein (.1) AT5G63320 89 / 6e-19 NPX1 nuclear protein X1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G219200 [exp] 544 / 0 AT2G34900 333 / 2e-112 IMBIBITION-INDUCIBLE 1, GLOBAL TRANSCRIPTION FACTOR GROUP E1, Transcription factor GTE6 (.1.2) Potri.001G073800 [exp] 382 / 3e-131 AT2G34900 350 / 7e-119 IMBIBITION-INDUCIBLE 1, GLOBAL TRANSCRIPTION FACTOR GROUP E1, Transcription factor GTE6 (.1.2) Potri.011G096400 [exp] 130 / 1e-33 AT1G06230 243 / 5e-72 global transcription factor group E4 (.1.2.3) Potri.013G118900 [exp] 110 / 5e-26 AT1G06230 463 / 5e-153 global transcription factor group E4 (.1.2.3) Potri.001G376400 [exp] 108 / 6e-26 AT1G06230 267 / 4e-82 global transcription factor group E4 (.1.2.3) Potri.019G090700 [exp] 107 / 3e-25 AT1G06230 443 / 2e-145 global transcription factor group E4 (.1.2.3) Potri.001G335000 [exp] 100 / 1e-22 AT3G27260 460 / 5e-151 global transcription factor group E8 (.1.2) Potri.015G091800 [exp] 98 / 7e-22 AT5G63320 521 / 6e-171 nuclear protein X1 (.1.2.3) Potri.001G285700 [exp] 94 / 1e-20 AT1G73150 214 / 4e-63 global transcription factor group E3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029774 [exp] 512 / 0 AT2G34900 378 / 5e-130 IMBIBITION-INDUCIBLE 1, GLOBAL TRANSCRIPTION FACTOR GROUP E1, Transcription factor GTE6 (.1.2) Lus10042803 [exp] 482 / 2e-170 AT2G34900 362 / 3e-123 IMBIBITION-INDUCIBLE 1, GLOBAL TRANSCRIPTION FACTOR GROUP E1, Transcription factor GTE6 (.1.2) Lus10018900 [exp] 321 / 1e-108 AT2G34900 254 / 2e-84 IMBIBITION-INDUCIBLE 1, GLOBAL TRANSCRIPTION FACTOR GROUP E1, Transcription factor GTE6 (.1.2) Lus10008393 [exp] 187 / 2e-57 AT3G52280 139 / 3e-39 general transcription factor group E6 (.1.2) Lus10033623 [exp] 108 / 2e-25 AT1G06230 493 / 9e-164 global transcription factor group E4 (.1.2.3) Lus10033624 [exp] 108 / 3e-25 AT1G06230 494 / 2e-163 global transcription factor group E4 (.1.2.3) Lus10017661 [exp] 108 / 3e-25 AT1G06230 499 / 3e-165 global transcription factor group E4 (.1.2.3) Lus10014609 [exp] 103 / 7e-24 AT3G27260 458 / 2e-150 global transcription factor group E8 (.1.2) Lus10032076 [exp] 96 / 4e-21 AT3G27260 450 / 6e-147 global transcription factor group E8 (.1.2) Lus10039630 [exp] 91 / 1e-19 AT5G65630 191 / 5e-54 global transcription factor group E7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00439 [poplar] [flax] Bromodomain Bromodomain CL0665 [poplar] [flax] BET PF17035 [poplar] [flax] BET Bromodomain extra-terminal - transcription regulation
Representative CDS sequence Show only first row Show all	>Potri.008G043000.1 pacid=42806078 polypeptide=Potri.008G043000.1.p locus=Potri.008G043000 ID=Potri.008G043000.1.v4.1 annot-version=v4.1 ATGGAAGCGATAAGCCCGTCGATTGTGGATTCCGGTAATCTCCCGATAAGAAATTCCGATGCCGAAGCAGAGGGTTTCAAGCATAGCGTGGATGAAATTC TTCAAAAAGTTGATAAATTGGAGCAAAGAGTGAACGAGGTCGAGCAGTTTTACTCGAAGAATACAAGTAAAAAGCAGCAGAGTGGTTCTTCGAAAGGTGG AAGCTCCACTGTGAAAGATAAAGATAAAGAGAGGCATATTCCTAGTATTAGGAAACAGCAGCAAGATGCATCGAAACGAGAGGCAGCTGCTGCTAAGAGA ATGCAAGAGCTTATGCGCCAATTCGGTACAATATTGCGTCAAATTACACAGCACAAATGGGCGTGGCCTTTTATGCAACCTGTGGATGTCAAAGGTCTTG GTTTGCATGACTATTATGAGGTTATCGACAAGCCCATGGATTTCAGTACAATTAAAAATCAAATGGAGGCCAAGGATGGCACAGGATACAAGAGTGTAAG GGAGATATGTGCTGATGTGAGGTTAGTGTTTAAGAATGCAATGAAATATAATGATGAAAGAAGTGATGTTCATGTTATGGCCAAAACATTGCTGGGAAAA TTTGAGGAGAAATGGCTACAGTTTCTGCCTAAAGTCACTGAAGAGGAGAAAAGAAGAGAGGAGGAGGAAGCGGAGGCTCAATTGGATATGCAGCTTGCTC AGGAGGCTGCTCATGCTAAAATGGCTCGTGATTTGGGTAATGAGCTTTATGAGGTTGATATGCATCTGGAAGAGCTTCGAGAAATGGTTGTTCAAAAGTG CAGAAAGATGTCCACCGAAGAGAAAAGAAAGCTTGGGGCAGCTCTTACAAGGCTATCTCCTGAAGACCTGACCAAAGCATTGGAGATTGTTGCTCAGAAT AATCCAGGCTTTCAAGCAACTGCTGAAGAGGTGGACCTTGACATCGATGCACAGAGCGAAACCACCCTATGGAGGCTAAAGTTTTTTGTGAAGGATGCGC TGGAAGTCCAGGGAAAAAGTGCAGCCAGCGCAGGTGGCCGAAACAACACCACTACCCCTAGCAATAATAACAATAACAACAACAAACGTAAAAGAGAGAT TTGCGATGCTATTGCCAAAACTGCCAAGAAAAGGAGTAAGAAGCCCTCCTCTTGA
AA sequence Show only first row Show all	>Potri.008G043000.1 pacid=42806078 polypeptide=Potri.008G043000.1.p locus=Potri.008G043000 ID=Potri.008G043000.1.v4.1 annot-version=v4.1 MEAISPSIVDSGNLPIRNSDAEAEGFKHSVDEILQKVDKLEQRVNEVEQFYSKNTSKKQQSGSSKGGSSTVKDKDKERHIPSIRKQQQDASKREAAAAKR MQELMRQFGTILRQITQHKWAWPFMQPVDVKGLGLHDYYEVIDKPMDFSTIKNQMEAKDGTGYKSVREICADVRLVFKNAMKYNDERSDVHVMAKTLLGK FEEKWLQFLPKVTEEEKRREEEEAEAQLDMQLAQEAAHAKMARDLGNELYEVDMHLEELREMVVQKCRKMSTEEKRKLGAALTRLSPEDLTKALEIVAQN NPGFQATAEEVDLDIDAQSETTLWRLKFFVKDALEVQGKSAASAGGRNNTTTPSNNNNNNNKRKREICDAIAKTAKKRSKKPSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G34900		GTE1, GTE01, IM...	IMBIBITION-INDUCIBLE 1, GLOBAL...		Potri.008G043000 [exp]	0	1
AT4G06599			ubiquitin family protein (.1)		Potri.004G219300 [exp]	6.92	0.7539
AT1G73180			Eukaryotic translation initiat...		Potri.013G126300 [exp]	7.74	0.7264
AT5G07950			unknown protein		Potri.018G051500 [exp]	8.00	0.7506
AT2G14170		ALDH6B2	aldehyde dehydrogenase 6B2 (....		Potri.001G242333 [exp]	8.00	0.6955
AT5G46550			DNA-binding bromodomain-contai...		Potri.011G077100 [exp]	8.36	0.7520
AT1G65660		SMP1	SWELLMAP 1, Pre-mRNA splicing ...		Potri.015G048200 [exp]	9.21	0.7541
AT4G27220			NB-ARC domain-containing disea...		Potri.005G041101 [exp]	11.87	0.7826
AT1G13030			sphere organelles protein-rela...		Potri.008G185100 [exp]	12.80	0.7587
AT4G27190			NB-ARC domain-containing disea...		Potri.005G042900 [exp]	13.26	0.7823	Pt-RGA-II24.67
AT5G61330			rRNA processing protein-relate...		Potri.019G085100 [exp]	14.49	0.6932

Compare expression of checked genes

Potri.008G043000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.