Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30230 50 / 6e-07 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G218300 [exp] 323 / 2e-112 AT4G30230 48 / 2e-06 unknown protein Potri.010G218500 [exp] 115 / 7e-31 ND / Potri.010G218400 [exp] 79 / 3e-17 ND / Potri.006G168400 [exp] 61 / 1e-10 AT4G30230 94 / 8e-23 unknown protein Potri.018G092800 [exp] 58 / 9e-10 AT4G30230 98 / 4e-24 unknown protein Potri.010G219300 [exp] 46 / 6e-06 ND / Potri.008G042900 [exp] 43 / 0.0001 ND /
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041416 [exp] 88 / 2e-20 AT4G30230 61 / 5e-11 unknown protein Lus10036511 [exp] 86 / 1e-19 AT4G30230 61 / 8e-11 unknown protein Lus10023495 [exp] 66 / 8e-13 ND 48 / 1e-06 Lus10040376 [exp] 65 / 8e-12 AT5G03030 184 / 6e-58 Chaperone DnaJ-domain superfamily protein (.1) Lus10040377 [exp] 40 / 0.0008 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.008G043300.1 pacid=42807131 polypeptide=Potri.008G043300.1.p locus=Potri.008G043300 ID=Potri.008G043300.1.v4.1 annot-version=v4.1 ATGGTTGCAAAAGAAACGAGCCTTCATCAAGTACCGGTACATGACAACAGTGAGTTGCAAGATTTTGATGATGCAGCAGAAACACTATCTCTATGTGATC TTCCTTTAAATGGTTATGCTTCTAATTGGGATGGCTTCTCCAGAGAAGATCAAAGCTTGGGATCGTCTTTTGATCAAGATTTCTTCGAGTTCTTCAGCGA AGACTTCACCGCCTCTAATATTTATCCCAAAGATGAAATCATCTTCTGTGGAAAGCTCATTACTTGCAAAGGAGAAGCAGTAGCAGAGAAAACACAGAAC CTGGAAAGCACAAAGAAAGCTAAAAATACCAAGAAGAGCTTCATTTTCCCATGGAAATCATCCTCTTTCAACAAGTCAAGGGCCACATCATCAAAACAGC TACAGGAAAAGAGTGACAAGACTTTGCAAGAGCCTTTATCAGAGAATCATGGGTTCGCAACAAGGAAATGCGATGATAGGTATGACTTTTCGATGAAGAA GGTATCAATACTAGCGACCCCAACGAAGCCAAGATGGTACTTTTTGGCATTTGGAGTTGGAAGACTTCCAATGGAGATGGAGCTAAGCGATATCAAGATG AGGCAGAGCAAGAAGAGCCCATCGAGGATGATTCAATCTGAAAAGGTGATTGAAACGAGTAGTGGGAATAAGAGAGGGAAAGGATCGTGGAGTTTGCTTC GGGTTTTGGGGTGCAACAGTCAACATTCCAGTGCTCGGGCTAAGGCATCACTTGGTGGTGCACCAATTGTGTGA
AA sequence Show only first row Show all	>Potri.008G043300.1 pacid=42807131 polypeptide=Potri.008G043300.1.p locus=Potri.008G043300 ID=Potri.008G043300.1.v4.1 annot-version=v4.1 MVAKETSLHQVPVHDNSELQDFDDAAETLSLCDLPLNGYASNWDGFSREDQSLGSSFDQDFFEFFSEDFTASNIYPKDEIIFCGKLITCKGEAVAEKTQN LESTKKAKNTKKSFIFPWKSSSFNKSRATSSKQLQEKSDKTLQEPLSENHGFATRKCDDRYDFSMKKVSILATPTKPRWYFLAFGVGRLPMEMELSDIKM RQSKKSPSRMIQSEKVIETSSGNKRGKGSWSLLRVLGCNSQHSSARAKASLGGAPIV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G30230			unknown protein		Potri.008G043300 [exp]	0	1
AT4G22030			F-box family protein with a do...		Potri.004G009500 [exp]	11.66	0.7680
AT3G21710			unknown protein		Potri.014G151900 [exp]	37.54	0.7244
AT1G62500			Bifunctional inhibitor/lipid-t...		Potri.008G135860 [exp]	80.05	0.6311
AT1G62500			Bifunctional inhibitor/lipid-t...		Potri.003G111300 [exp]	111.95	0.6606
AT3G12580		ATHSP70, HSP70	ARABIDOPSIS HEAT SHOCK PROTEIN...		Potri.008G054733 [exp]	118.84	0.6536
AT2G17070			Arabidopsis protein of unknown...		Potri.009G142500 [exp]	121.49	0.6568
AT1G68090		ANN5, ANNAT5	ANNEXIN ARABIDOPSIS THALIANA 5...		Potri.008G139500 [exp]	161.19	0.6305	Pt-ANN5.2
AT1G75090			DNA glycosylase superfamily pr...		Potri.002G133800 [exp]	165.43	0.6580
AT1G04150			C2 calcium/lipid-binding plant...		Potri.002G254400 [exp]	168.98	0.6461
AT4G12470		AZI1	azelaic acid induced 1 (.1)		Potri.002G200100 [exp]	270.85	0.6160

Compare expression of checked genes

Potri.008G043300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.