Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55510 590 / 0 RBL REBELOTE, Noc2p family (.1) AT2G18220 371 / 4e-118 Noc2p family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G012800 [exp] 368 / 1e-116 AT2G18220 766 / 0.0 Noc2p family (.1) Potri.003G213601 [exp] 213 / 1e-62 AT2G18220 416 / 4e-140 Noc2p family (.1) Potri.003G213450 [exp] 44 / 9e-05 AT2G18220 118 / 5e-31 Noc2p family (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036510 [exp] 714 / 0 AT5G57250 718 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10020167 [exp] 669 / 0 AT3G55510 459 / 3e-154 REBELOTE, Noc2p family (.1) Lus10041417 [exp] 660 / 0 AT3G55510 487 / 2e-163 REBELOTE, Noc2p family (.1) Lus10026968 [exp] 462 / 2e-158 AT3G55510 336 / 1e-110 REBELOTE, Noc2p family (.1) Lus10025551 [exp] 352 / 9e-110 AT2G18220 831 / 0.0 Noc2p family (.1) Lus10027010 [exp] 315 / 2e-97 AT2G18220 760 / 0.0 Noc2p family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03715 [poplar] [flax] Noc2 Noc2p family
Representative CDS sequence Show only first row Show all	>Potri.008G043400.1 pacid=42808500 polypeptide=Potri.008G043400.1.p locus=Potri.008G043400 ID=Potri.008G043400.1.v4.1 annot-version=v4.1 ATGGGGAAACTAGGAAAGAAAGCAAGGAAGTTTGCAAAGAAGAATTTACAGTCAGTGCTTAAAAGGCAGAGGAAGGTCAAGTCTTTCTTCAAAAAGAAAG CTTCTAAAAGAGATGGGAGAGCTCAAGCTGAAGATTCCGATGGAGAAAGAGAAGAAAAGTATAGTGGAAGAAACAATGAAGTTGAAGATTTTAAGGATAT TTCTCTTGATATCGTATTTGGTGAAGATGATAGTGATATGGATGGGGATGATTCAGATAGTGACGGATATTTATCTGAGGATACAAGTTGTTCATATAAT GGTGAAACTAGAATTGAGAATCATCTGGAAGAGTACAATGGTGGTGGTGATTTATCGGTGCAGAACAAGGAAATTCATTTAGAACTGGCAAAGAAAATGA AAAGGCTGAACAACTTGAAAGCCAAGGATCCAGAATTTGCCAAGTTTTTGGAAAGCAGCAAGGAACATCTGCAGACATTAAGGGATGAGGAAAATCAGTA TTCAGATGAAGAAGAGTCTGATGAGGATGGCAGGGAGTCCACAAATAAAATGGGGAATTTGAGTAGCTCTACTGTTGATTCTTTGTGTGAACTAGTCAAG GAGCAGAATAATGTTCCTGCTTTTGTAAGGCTATTAAACGGGTACAGGGCTGCCTGCCACTATGGATCTGAATCACCCACCATTGTTGAAGACAGCCACA CTTTTTGCAAGATCTTGACATTCATGCTTCACGAGGCTGATAATATATTTCGTAAAATTCTGGGAATATCAGGCTCCAATGATAGGAAAGAGGCCATCTT GGAACTGAAGAATACTTCCAAATGGAAAACTTTGAAGCCAGTAGTCAAGTCTTACTTGAGAAGTACCCTGTTTCTCCTAAATGAGGTTACTGACTCTCAG ATATTAGCCTTCGCCTTAACCAGACTCAAAGCTTCTATAGTATTTTTTGCTGCCTTTCCTCCTTTACTAGGCAGACTCATCAAGATATCAGTTCATTTAT GGGCAACGGGCAAAGGAACTCTATCAGCATGCTCACTTCTCATCATCAAAGATGTGGCTGTTGTGTTTAACTCAAATTGCTTTGAAACCTGCATGATTAA AGCATACAAGGCTTTTATTGACCACTGCAAGTTTGTGGATCCAGTTCTGTTTAAGCATCAACAATTTCTGAAAAGCTCCTTCATCGAGCTATGCTCTCAA GATCTGCAGAAAGCTTATAGCAAGGCAGTGGTTTCTATCCAGCAACTTGCCAAGATATTGCAGCTTGGTTTACGAACTAAGAAGGAAGCAGTAAAGAAGA TATGCAGTTGGCAGTATGCTAACTGTGTAGATCTGTGGGTTGCATTTATTTCTTTGAATATACATGATTATGATCTGCAGCCTCTGCTTTATACGATAAT TCAGATCATAAATGGAGTAGCTGTCCTGTTTCCAGGACCAAGATACATGCCTTTAAGAGTTAAATGCATCCAATGGTTGAATACTCTCTCTGAATCTAGT GGAGTTTTCATCCCAATTACATCATTAGTGCTGGATATTTTGGAATATAAAATAGGCAAGGAGAGTTCGAAACCTGGAAAGGACTTCAGCTTTTCATCTG CGGTCAAGTTGCCAAAGCATTGGCTAAAATCTCGAAACTTCCAGGACGAGTGTGTTTTTTCAGCCATTGAGCTGTTGGCGGTGCACTTTGCTCAATGGAG TTATCACATATCATTTCCTGATCTTGCAACCATTCCACTCATCTATTTGAGGAAATTCTATGAGACGACTACTATTGAGAGTTTACGGCGTGTGGTGAAG CGTTTTATTGATCAGGTAGAGCAGAACATTGAGTTTGTCCGGAAGAAGAGAGATGAGGTTACTTTTTCTCCGAATGATCAGCAATCTGTTGAATCATTTC TTCAGCTTGAAAAGTGCGGTGGCAATGCTCCATTTACAAAATATTACACAAGTGTAATTGAAAAGGCTGGTTCCAGAAATCTGCTTATGAATGGAAAAAT AAGCTCCCTGGAGCAGAAGAAATCGAAAGGAAAGAGGCAACAAACTCCAAAGAACGCAATTAAGGTGGATTTGGCTGTTAATGCTGAAGGAAATTCACAT TAA
AA sequence Show only first row Show all	>Potri.008G043400.1 pacid=42808500 polypeptide=Potri.008G043400.1.p locus=Potri.008G043400 ID=Potri.008G043400.1.v4.1 annot-version=v4.1 MGKLGKKARKFAKKNLQSVLKRQRKVKSFFKKKASKRDGRAQAEDSDGEREEKYSGRNNEVEDFKDISLDIVFGEDDSDMDGDDSDSDGYLSEDTSCSYN GETRIENHLEEYNGGGDLSVQNKEIHLELAKKMKRLNNLKAKDPEFAKFLESSKEHLQTLRDEENQYSDEEESDEDGRESTNKMGNLSSSTVDSLCELVK EQNNVPAFVRLLNGYRAACHYGSESPTIVEDSHTFCKILTFMLHEADNIFRKILGISGSNDRKEAILELKNTSKWKTLKPVVKSYLRSTLFLLNEVTDSQ ILAFALTRLKASIVFFAAFPPLLGRLIKISVHLWATGKGTLSACSLLIIKDVAVVFNSNCFETCMIKAYKAFIDHCKFVDPVLFKHQQFLKSSFIELCSQ DLQKAYSKAVVSIQQLAKILQLGLRTKKEAVKKICSWQYANCVDLWVAFISLNIHDYDLQPLLYTIIQIINGVAVLFPGPRYMPLRVKCIQWLNTLSESS GVFIPITSLVLDILEYKIGKESSKPGKDFSFSSAVKLPKHWLKSRNFQDECVFSAIELLAVHFAQWSYHISFPDLATIPLIYLRKFYETTTIESLRRVVK RFIDQVEQNIEFVRKKRDEVTFSPNDQQSVESFLQLEKCGGNAPFTKYYTSVIEKAGSRNLLMNGKISSLEQKKSKGKRQQTPKNAIKVDLAVNAEGNSH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G55510		RBL	REBELOTE, Noc2p family (.1)		Potri.008G043400 [exp]	0	1
AT3G22330		ATRH53, PMH2	putative mitochondrial RNA hel...		Potri.006G024100 [exp]	1.73	0.9351
AT5G16750		TOZ	TORMOZEMBRYO DEFECTIVE, Transd...		Potri.013G079600 [exp]	2.44	0.9232
AT2G43650		EMB2777	EMBRYO DEFECTIVE 2777, Sas10/U...		Potri.013G125800 [exp]	3.46	0.9091
AT3G10530			Transducin/WD40 repeat-like su...		Potri.008G029100 [exp]	3.74	0.9044
AT2G18220			Noc2p family (.1)		Potri.001G012800 [exp]	4.47	0.9088
AT4G28200			unknown protein		Potri.007G040000 [exp]	4.69	0.8942
AT1G31660			unknown protein		Potri.011G112500 [exp]	4.89	0.9023
AT3G12270		ATPRMT3	ARABIDOPSIS THALIANA PROTEIN A...		Potri.001G030200 [exp]	6.00	0.8865
AT3G23370			RNA-binding (RRM/RBD/RNP motif...		Potri.010G070001 [exp]	6.24	0.8860
AT5G09840			Putative endonuclease or glyco...		Potri.001G307700 [exp]	6.48	0.9143

Compare expression of checked genes

Potri.008G043400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.