Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	RCY1.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26430 474 / 2e-166 ATRCY1, RCY1 arginine-rich cyclin 1 (.1.2.3) AT4G19600 136 / 5e-35 CYCT1;4 Cyclin family protein (.1) AT5G45190 135 / 2e-34 Cyclin family protein (.1.2) AT1G35440 112 / 3e-28 CYCT1;1 cyclin T1;1 (.1) AT4G19560 101 / 4e-23 CYCT1;2 Cyclin family protein (.1) AT1G27630 94 / 5e-21 CYCT1;3 cyclin T 1;3 (.1) AT5G48640 57 / 7e-09 Cyclin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G148800 [exp] 141 / 2e-36 AT5G45190 635 / 0.0 Cyclin family protein (.1.2) Potri.002G032300 [exp] 134 / 1e-34 AT5G45190 333 / 6e-109 Cyclin family protein (.1.2) Potri.007G067100 [exp] 135 / 2e-34 AT5G45190 564 / 0.0 Cyclin family protein (.1.2) Potri.005G097400 [exp] 135 / 2e-34 AT5G45190 550 / 0.0 Cyclin family protein (.1.2) Potri.001G081600 [exp] 125 / 6e-31 AT5G45190 636 / 0.0 Cyclin family protein (.1.2) Potri.008G150500 [exp] 108 / 6e-26 AT4G19600 229 / 4e-70 Cyclin family protein (.1) Potri.010G090400 [exp] 89 / 2e-19 AT4G19600 171 / 1e-48 Cyclin family protein (.1) Potri.014G194900 [exp] 56 / 8e-09 AT5G48630 346 / 1e-121 Cyclin family protein (.1.2) Potri.002G246800 [exp] 56 / 9e-09 AT5G48630 382 / 6e-136 Cyclin family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041418 [exp] 489 / 3e-168 AT2G26430 475 / 2e-163 arginine-rich cyclin 1 (.1.2.3) Lus10036509 [exp] 405 / 1e-139 AT2G26430 411 / 2e-143 arginine-rich cyclin 1 (.1.2.3) Lus10040640 [exp] 132 / 1e-33 AT5G45190 587 / 0.0 Cyclin family protein (.1.2) Lus10021927 [exp] 100 / 1e-22 AT5G45190 246 / 2e-75 Cyclin family protein (.1.2) Lus10036192 [exp] 81 / 3e-16 AT5G45190 483 / 5e-167 Cyclin family protein (.1.2) Lus10041213 [exp] 79 / 7e-16 AT5G45190 173 / 4e-49 Cyclin family protein (.1.2) Lus10038329 [exp] 75 / 2e-14 AT5G45190 483 / 3e-167 Cyclin family protein (.1.2) Lus10002354 [exp] 62 / 9e-11 AT5G48630 397 / 2e-141 Cyclin family protein (.1.2) Lus10003151 [exp] 62 / 9e-11 AT5G48630 402 / 2e-143 Cyclin family protein (.1.2) Lus10036191 [exp] 39 / 0.0008 AT5G45190 109 / 1e-29 Cyclin family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0065 [poplar] [flax] Cyclin PF00134 [poplar] [flax] Cyclin_N Cyclin, N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.008G043600.1 pacid=42806188 polypeptide=Potri.008G043600.1.p locus=Potri.008G043600 ID=Potri.008G043600.1.v4.1 annot-version=v4.1 ATGATTTACACAGCGATTGATAACTTCTATTTAACTGATGATGAGCTACAAAACTCCCCGTCAAGGAAAGATGGAATCGATGAAGCTACGGAGACAACTC TTAGGATCTATGGCTGTGATCTTATCCAAGAGAGCGGCATTTTACTCAAACTACCTCAAGCTGTGATGGCTACCGGTCAAGTTTTATTCCACCGATTCTA TTGCAAGAAGTCATTTGCCCGTTTCAATGTCAAGAAAGTTGCGGCTAGCTGTGTATGGCTTGCATCTAAACTTGAGGAAAGTCCTAGGAAATCGAGGCAA GTCATCATTGTTTTCCACAGAATGGAGTGCAGGAGGGAAAACTTACCCTTGGAGTTTTTGGATCTGAATTCAAAGAAGTTTGCAGAGTTGAAGATTGAGT TGAGCAAAACAGAGAGGCATATATTGAAGGAAATGGGTTTTGTTTGTCATGTTGAGCATCCCCACAAATTCATTTCGAACTACCTAATGACCCTTGGAAC ACCTCAAGAATTAAGACAAGAAGCATGGAACTTAGCTAATGATAGTTTGCGGACAACTTTGTGTGTTCGTTTCAAGAGTGCAGTTGTGGCTTGCGGTGTT GTATATGCTGCAGCTCGTAGATTTCAAGTACCTCTTCCTGAGAATCCACCATGGTGGAAAGCATTTGATGCAGAGAAATCTGGGATTGATGAAGTTTGTA GAGTTTTGGCTCACCTATATAGCCTTCCTAAGGCACAGTATGTATCAGTCTGCAAGGATGGAGATTTTTCTTTTTCGAACAAGTCTTCAGATTCCCAATT GCAGCTGATTTCAAAGGAAATTCCACGGACTACTAGCCTGCCAGCTAATAATGATTCAACTGAACCAAAGGCAGCTCCAAGTGGTGTTAATGTTGAATCT GGCGGATCCAAGGACATAACAAAAGTTGCCTTAGACAAGCTGAAGGAATCTAAAAAGACCGATGATGAATCCAAGCCCGCTGAGGGAGAAGCAAGAGAAG AGCTCATTCCAAGATCAAAGTCTGAGCACAGAACAGAAGCGGGTGGTGACAAGAGCAAGGAACGGGACAGGGACAGGGAGAGGGAAAGAGAGAGGGATAG AATAAAGGCCCAGGATCGTGATAGGGGCAGAGATTCTGACCGGGAAAGAGAGCGAGATGAAATTGAAAGAGACAGGGATAGGGCTAAGGATCGAGGTCGT CATCGTTCAAAGGATAGAGGAAGAGAGTCAGGACACTCGGAGAAATCAAGGCATCACTCCTCACGTGACCGTGACTACCACAGTTCCTCCTATTCATCAA GGGAGAAGGACCGGCATAGGCACCACTCATATGCTTGA
AA sequence Show only first row Show all	>Potri.008G043600.1 pacid=42806188 polypeptide=Potri.008G043600.1.p locus=Potri.008G043600 ID=Potri.008G043600.1.v4.1 annot-version=v4.1 MIYTAIDNFYLTDDELQNSPSRKDGIDEATETTLRIYGCDLIQESGILLKLPQAVMATGQVLFHRFYCKKSFARFNVKKVAASCVWLASKLEESPRKSRQ VIIVFHRMECRRENLPLEFLDLNSKKFAELKIELSKTERHILKEMGFVCHVEHPHKFISNYLMTLGTPQELRQEAWNLANDSLRTTLCVRFKSAVVACGV VYAAARRFQVPLPENPPWWKAFDAEKSGIDEVCRVLAHLYSLPKAQYVSVCKDGDFSFSNKSSDSQLQLISKEIPRTTSLPANNDSTEPKAAPSGVNVES GGSKDITKVALDKLKESKKTDDESKPAEGEAREELIPRSKSEHRTEAGGDKSKERDRDRERERERDRIKAQDRDRGRDSDRERERDEIERDRDRAKDRGR HRSKDRGRESGHSEKSRHHSSRDRDYHSSSYSSREKDRHRHHSYA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G26430		ATRCY1, RCY1	arginine-rich cyclin 1 (.1.2.3...		Potri.008G043600 [exp]	0	1	RCY1.2
AT1G26110		DCP5	decapping 5 (.1.2)		Potri.010G131400 [exp]	13.37	0.8293
AT2G36070		ATTIM44-2	translocase inner membrane sub...		Potri.002G038300 [exp]	13.96	0.7936	Pt-ATTIM44.1
AT4G18905			Transducin/WD40 repeat-like su...		Potri.007G019601 [exp]	16.49	0.7500
AT3G62130		LCD	L-cysteine desulfhydrase, Pyri...		Potri.014G112700 [exp]	20.85	0.7985
AT3G04610		FLK	flowering locus KH domain, RNA...		Potri.005G056100 [exp]	23.40	0.7952
AT1G03140			splicing factor Prp18 family p...		Potri.005G210600 [exp]	23.64	0.7864
AT4G31880			unknown protein		Potri.018G020400 [exp]	26.72	0.7635
AT3G13990			Kinase-related protein of unkn...		Potri.001G170700 [exp]	38.67	0.7874
AT1G77180		SKIP	chromatin protein family (.1.2...		Potri.018G086100 [exp]	39.24	0.7860
AT1G01930	C2H2ZnF		zinc finger protein-related (....		Potri.002G149800 [exp]	43.45	0.7920

Compare expression of checked genes

Potri.008G043600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.