Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G35800 1044 / 0 SAMTL S-adenosyl methionine transporter-like, mitochondrial substrate carrier family protein (.1) AT2G26360 403 / 2e-133 Mitochondrial substrate carrier family protein (.1) AT1G34065 136 / 9e-35 SAMC2 S-adenosylmethionine carrier 2 (.1) AT4G39460 132 / 2e-33 SAMC1, SAMT1 SAM TRANSPORTER1, S-adenosylmethionine carrier 1 (.1.2) AT1G74240 123 / 2e-30 Mitochondrial substrate carrier family protein (.1) AT5G42130 110 / 9e-26 AtMfl1 MitoFerrinLike1, Mitochondrial substrate carrier family protein (.1) AT4G11440 111 / 4e-25 Mitochondrial substrate carrier family protein (.1) AT4G32400 96 / 1e-20 EMB42, EMB104, ATBT1, SHS1 SODIUM HYPERSENSITIVE 1, EMBRYO DEFECTIVE 42, EMBRYO DEFECTIVE 104, ARABIDOPSIS THALIANA BRITTLE 1, Mitochondrial substrate carrier family protein (.1) AT5G51050 95 / 4e-20 APC2 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) AT5G61810 95 / 5e-20 APC1 ATP/phosphate carrier 1, Mitochondrial substrate carrier family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G217900 [exp] 1463 / 0 AT2G35800 1040 / 0.0 S-adenosyl methionine transporter-like, mitochondrial substrate carrier family protein (.1) Potri.005G085900 [exp] 137 / 2e-35 AT4G39460 487 / 9e-175 SAM TRANSPORTER1, S-adenosylmethionine carrier 1 (.1.2) Potri.005G197200 [exp] 127 / 4e-32 AT4G39460 417 / 3e-147 SAM TRANSPORTER1, S-adenosylmethionine carrier 1 (.1.2) Potri.005G189600 [exp] 109 / 2e-25 AT5G42130 542 / 0.0 MitoFerrinLike1, Mitochondrial substrate carrier family protein (.1) Potri.003G127600 [exp] 108 / 3e-24 AT4G11440 437 / 3e-146 Mitochondrial substrate carrier family protein (.1) Potri.012G066000 [exp] 104 / 6e-24 AT1G74240 446 / 6e-158 Mitochondrial substrate carrier family protein (.1) Potri.015G108900 [exp] 103 / 7e-23 AT5G51050 725 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) Potri.012G110700 [exp] 102 / 1e-22 AT5G51050 714 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) Potri.014G135530 [exp] 89 / 8e-19 AT4G03115 422 / 2e-149 Mitochondrial substrate carrier family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040375 [exp] 1147 / 0 AT2G35800 1066 / 0.0 S-adenosyl methionine transporter-like, mitochondrial substrate carrier family protein (.1) Lus10023493 [exp] 1141 / 0 AT2G35800 1056 / 0.0 S-adenosyl methionine transporter-like, mitochondrial substrate carrier family protein (.1) Lus10005787 [exp] 138 / 1e-35 AT4G39460 494 / 2e-177 SAM TRANSPORTER1, S-adenosylmethionine carrier 1 (.1.2) Lus10006812 [exp] 132 / 2e-33 AT4G39460 478 / 6e-171 SAM TRANSPORTER1, S-adenosylmethionine carrier 1 (.1.2) Lus10017849 [exp] 110 / 1e-25 AT1G74240 430 / 6e-151 Mitochondrial substrate carrier family protein (.1) Lus10029770 [exp] 108 / 4e-25 AT5G42130 478 / 5e-169 MitoFerrinLike1, Mitochondrial substrate carrier family protein (.1) Lus10016736 [exp] 99 / 2e-21 AT5G51050 749 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) Lus10043022 [exp] 94 / 1e-19 AT5G51050 758 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) Lus10022431 [exp] 89 / 3e-18 AT5G51050 737 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) Lus10024769 [exp] 83 / 9e-17 AT4G03115 401 / 3e-141 Mitochondrial substrate carrier family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00153 [poplar] [flax] Mito_carr Mitochondrial carrier protein CL0220 [poplar] [flax] EF_hand PF13405 [poplar] [flax] EF-hand_6 EF-hand domain
Representative CDS sequence Show only first row Show all	>Potri.008G043700.3 pacid=42806793 polypeptide=Potri.008G043700.3.p locus=Potri.008G043700 ID=Potri.008G043700.3.v4.1 annot-version=v4.1 ATGGTGTCTACAAATGATCCAATAGAGTCTTTTATGAATTCAATTCAAGTGGTCAGAGATGCTCTTTCACCACTTGAACTTGGGATTCGGAAAGCTGCTA AAGATCTTGAAACTTGCTGGGGGGTTTCAAAGAATGATCATAAGGCAACCCGTGATTCAGATACTGATAATAGCAGTAAAGTCTCAATCTTCACTGTGAA AAAGAAGAGTGTTAGTCTTGGAAATAGTGAGAATAGGCATTGCGGGGTTAGTGAAGAGAAAAGGAAAGGATTTTTATCCATCAAGGTTCCTGTTAGGAGT TTATTGAGGATGTTTTCGATGAATTTGGAAAGTGGACACAGAAATGGCGGTGATGATAAGGTTGGGGTTTCGAAGAAATTGTTGAAAGAGAAGGAGACGA GGAATGAAGATGGGTCTTGTGTAAATTGTTTGCGGTTTGCCTTGACGTGGTCTTTGTTGGTTAATGGTTTTGTTCAGGCATTTCCTAGCCCATTTAAAAC AAACAAGAAACGGTTTCAGAAAGCAGGTGACGAGGATAAAGAGTATTTGCATTTGTGCAAAAATGGGTCAAAAGCAAAGGTTTCGGGCGAACTGAAGCAA AGGGAATTGAAGGTTCAATCTGTTAAAGGGTATCAGAATGTGAACGAGAAGGGTAAAACAGAGAAACACGTGTCCATCGAATGCTTTATAGGGTTTCTAT TTGACCTCTTGATTCAGAATCTACAGAAGTTTGATCAGAGTTTACAGGAAAGAAATGTCAAGGGTTGTAAAAATAATTGTTCGAACTCAACTCCAGTGCC CTCCCAGTTTGATCATTTGACGGCAATCATGAGTATTTGGGAAGGTCAAAAGGTGCATGTAGATGGATTTTTGGGAAATTTGAGTTTTGCCAGAGTTGGT GGGCTACCATCAAGCATAGTTGGAGTATCCTCTTCAGTTAATGAAGAAGGTGATGATGGTGTAAGCAGCGCGCCTACCAACAGCACCGAGGACACTGGGG GTAGTTCGCCACAGAAACTAGCTAGTGGGATACTAAGCATTCCGCTATCGAATGTAGAGCGTTTGAGATCCACATTATCCACGGTTTCTTTCACAGAGTT GATTGAGCTTGTGCAGCAGCTTGGTCGATCTTCTAAAGAATATCCTGACAAGAAAAAGCTGTTCTCTGTCCAGGATTTCTTTAGATACACAGAGACCGAA GGAAGGAGATTCTTTGAGGAACTGGACAGAGATGGTGATGGTCAAGTGACTTTGGAGGATCTCGAAATTGCGTTGAGAAAGAGAAAATTACCCCGTAAAT ATGCTCGGGAATTCATGCACCGTACTAGAAGTCACCTATTCTCAAAATCATTTGGTTGGAAACAGTTTTTGTCCTTGATGGAACAGAAGGAACCGACAAT TCTCCGTGCTTACACTTCTCTTTGTTTGAGCAAGTCTGGGACCCTGCAAAAGAGTGAAATATTGGCATCATTAAAAAATTCTGGACTGCCAGCAAATGAA GACAATGCTGTTGCTATGATGCGATTTTTGAATGCAGACACTGAAGAATCTATTTCTTATGGGCATTTTCGTAATTTTATGCTTCTGTTGCCTCCTGATC GACTTCAAGATGATCCCAGGAATATATGGTTTGAAGCTGCAACTGTTGTTGCTGTTGCACCACCCGTGGAAATACCTGCTGGAAGTGTTTTAAGATCTGC TTTGGCTGGGGGTCTTTCATGTGCACTCTCCTGTTCTCTTATGCATCCTGTTGATACAATTAAGACTCGGGTGCAAGCTTCAACGTTGACTTTCCCAGAA ATAATTTCAAAACTTCCACAAATTGGAGTTCGAGGATTGTACAGGGGTTCAATTCCTGCAATTTGGGGACAGTTTTCAAGCCATGGCTTGCGAACTGGGA TTTTTGAAGCTACCAAACTTGTGCTAATAAATGTTGCCCCAACACTCCCAGATATCCAGGTTCAATCTGTAGCATCATTCTGCAGCACATTTTTGGGGAC AGCAGTGCGGATCCCATGTGAGGTACTGAAGCAGCGTTTGCAGGCTGGCCTTTTTGACAATGTAGGACAGGCTATTGTTGGTACTTGGCAGCAAGATGGC CTAAAGGGGTTCTTTCGTGGGACTGGTGCAACTCTTTTCCGTGAGGTTCCATTTTATGTTGCTGGCATGTGTCTATACGGCGAGTCCAAGAAGGTTGCTC AACAACTTCTAAGGCGGGAGCTGGAACCCTGGGAAACAATTGCAGTTGGGGCTTTATCTGGAGGCCTAACTGCTGTTGTCACTACCCCTTTTGATGTGAT GAAAACTAGAATGATGACAGCTCCACCAGGAAGAACTGTATCAATGTCATTTATAGTTTTCTCTATACTCCGACATGAGGGGCCCCTTGGCTTATTCAAA GGAGCAGTGCCGAGGTTTTTCTGGATTGCTCCCTTAGGCGCCATGAATTTTGCAGGCTATGAGCTAGCAAGGAAGGCCATGGACAAAAACGAGGAGGCAG CTAGATCAGCTGTCTCAGAAAAAAGTTGA
AA sequence Show only first row Show all	>Potri.008G043700.3 pacid=42806793 polypeptide=Potri.008G043700.3.p locus=Potri.008G043700 ID=Potri.008G043700.3.v4.1 annot-version=v4.1 MVSTNDPIESFMNSIQVVRDALSPLELGIRKAAKDLETCWGVSKNDHKATRDSDTDNSSKVSIFTVKKKSVSLGNSENRHCGVSEEKRKGFLSIKVPVRS LLRMFSMNLESGHRNGGDDKVGVSKKLLKEKETRNEDGSCVNCLRFALTWSLLVNGFVQAFPSPFKTNKKRFQKAGDEDKEYLHLCKNGSKAKVSGELKQ RELKVQSVKGYQNVNEKGKTEKHVSIECFIGFLFDLLIQNLQKFDQSLQERNVKGCKNNCSNSTPVPSQFDHLTAIMSIWEGQKVHVDGFLGNLSFARVG GLPSSIVGVSSSVNEEGDDGVSSAPTNSTEDTGGSSPQKLASGILSIPLSNVERLRSTLSTVSFTELIELVQQLGRSSKEYPDKKKLFSVQDFFRYTETE GRRFFEELDRDGDGQVTLEDLEIALRKRKLPRKYAREFMHRTRSHLFSKSFGWKQFLSLMEQKEPTILRAYTSLCLSKSGTLQKSEILASLKNSGLPANE DNAVAMMRFLNADTEESISYGHFRNFMLLLPPDRLQDDPRNIWFEAATVVAVAPPVEIPAGSVLRSALAGGLSCALSCSLMHPVDTIKTRVQASTLTFPE IISKLPQIGVRGLYRGSIPAIWGQFSSHGLRTGIFEATKLVLINVAPTLPDIQVQSVASFCSTFLGTAVRIPCEVLKQRLQAGLFDNVGQAIVGTWQQDG LKGFFRGTGATLFREVPFYVAGMCLYGESKKVAQQLLRRELEPWETIAVGALSGGLTAVVTTPFDVMKTRMMTAPPGRTVSMSFIVFSILRHEGPLGLFK GAVPRFFWIAPLGAMNFAGYELARKAMDKNEEAARSAVSEKS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G35800		SAMTL	S-adenosyl methionine transpor...		Potri.008G043700 [exp]	0	1
AT1G33240	Trihelix	AT-GTL2, AT-GTL...	GT2-LIKE 1, GT-2-like 1 (.1)		Potri.011G147400 [exp]	4.47	0.8305
AT2G47070	SBP	SPL1	squamosa promoter binding prot...		Potri.010G154000 [exp]	6.00	0.8299	Pt-SPL1.4
AT4G32030			unknown protein		Potri.006G259700 [exp]	8.71	0.7834
AT4G39850		AtABCD1, ACN2, ...	PEROXISOME DEFECTIVE 3, COMATO...		Potri.007G092200 [exp]	11.22	0.8178
AT3G44530		HIRA	homolog of histone chaperone H...		Potri.009G144800 [exp]	11.74	0.8258
AT4G38470		STY46	serine/threonine/tyrosine kina...		Potri.009G139400 [exp]	12.32	0.8144
AT3G22380		TIC	time for coffee (.1.2)		Potri.002G052300 [exp]	12.36	0.8099
AT1G76880	Trihelix		Duplicated homeodomain-like su...		Potri.002G068600 [exp]	13.96	0.7900	GT2.3
AT5G08470		EMB2817, PEX1	EMBRYO DEFECTIVE 2817, peroxis...		Potri.001G174100 [exp]	15.19	0.7962
AT4G33200		XI-15, ATXI-I, ...	MYOSIN XI-15, MYOSIN XI I, myo...		Potri.006G220000 [exp]	17.17	0.8191

Compare expression of checked genes

Potri.008G043700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.