Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52300 291 / 2e-102 ATPQ "ATP synthase D chain, mitochondrial", ATP synthase D chain, mitochondrial (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G217800 [exp] 322 / 2e-114 AT3G52300 281 / 1e-98 "ATP synthase D chain, mitochondrial", ATP synthase D chain, mitochondrial (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038474 [exp] 309 / 1e-109 AT3G52300 297 / 7e-105 "ATP synthase D chain, mitochondrial", ATP synthase D chain, mitochondrial (.1.2) Lus10023337 [exp] 308 / 4e-109 AT3G52300 298 / 2e-105 "ATP synthase D chain, mitochondrial", ATP synthase D chain, mitochondrial (.1.2) Lus10023492 [exp] 298 / 5e-105 AT3G52300 295 / 8e-104 "ATP synthase D chain, mitochondrial", ATP synthase D chain, mitochondrial (.1.2) Lus10040374 [exp] 297 / 1e-104 AT3G52300 293 / 3e-103 "ATP synthase D chain, mitochondrial", ATP synthase D chain, mitochondrial (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05873 [poplar] [flax] Mt_ATP-synt_D ATP synthase D chain, mitochondrial (ATP5H)
Representative CDS sequence Show only first row Show all	>Potri.008G043800.1 pacid=42806048 polypeptide=Potri.008G043800.1.p locus=Potri.008G043800 ID=Potri.008G043800.1.v4.1 annot-version=v4.1 ATGAGCGGACCATCAAAGAAAGTAGTGGATGTGGCATTTAAAGCATCGAGAACCATCGATTGGGATGGGATGGCTAAGCTTTTAGTCTCTGATGAGGCTC GCAAAGAGTTCGCTACACTTCGTCGCGCTTTCAACGAAGTTAACTCCCAACTCGAGACCAAGTTCAGCCAGGAACCCGAACCCATAGACTGGGAATATTA TAGAAGAGGAATTGGGTCTCGCTTGGTGGACATGTACAAACAGGCATATGAAAGCATAGAGATCCCCAAGTTTCAAGATAAAGTGACTCCAGAATACAAG CCTAAATTTGATCAATTGTTGGTGGAATTGAAAGAAGCAGAGCAACAATCCCTGAAGGAGTCTGAGCGTCTGGAGAAAGAAATTGCTGAAGTTCAAGAAT TGAAGACAAAAATCAGCACCATGACTGCAGAGGAGTACTTTGAGAAGCATCCTGAGCTGAAGAAAAAGTTTGATGACGAAATCCGCAATGACTATTGGGG TTATTGA
AA sequence Show only first row Show all	>Potri.008G043800.1 pacid=42806048 polypeptide=Potri.008G043800.1.p locus=Potri.008G043800 ID=Potri.008G043800.1.v4.1 annot-version=v4.1 MSGPSKKVVDVAFKASRTIDWDGMAKLLVSDEARKEFATLRRAFNEVNSQLETKFSQEPEPIDWEYYRRGIGSRLVDMYKQAYESIEIPKFQDKVTPEYK PKFDQLLVELKEAEQQSLKESERLEKEIAEVQELKTKISTMTAEEYFEKHPELKKKFDDEIRNDYWGY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G52300		ATPQ	"ATP synthase D chain, mitocho...		Potri.008G043800 [exp]	0	1
AT1G63000		UER1, NRS/ER	"UDP-4-KETO-6-DEOXY-D-GLUCOSE-...		Potri.001G112000 [exp]	4.24	0.8684
AT5G22130		PNT1	PEANUT 1, mannosyltransferase ...		Potri.001G031500 [exp]	6.48	0.8562	Pt-PNT1.1
AT5G64813		LIP1	Light Insensitive Period1, Ras...		Potri.005G085100 [exp]	7.74	0.8380
AT4G29480			Mitochondrial ATP synthase sub...		Potri.006G232000 [exp]	8.42	0.8759
AT3G01280		VDAC1, ATVDAC1	ARABIDOPSIS THALIANA VOLTAGE D...		Potri.008G194900 [exp]	12.00	0.8594	Pt-POR1.1
AT5G56020			Got1/Sft2-like vescicle transp...		Potri.011G164900 [exp]	13.74	0.8508
AT3G24160		PMP	putative type 1 membrane prote...		Potri.001G049800 [exp]	15.58	0.8336	Pt-PMP.1
AT3G22845			emp24/gp25L/p24 family/GOLD fa...		Potri.010G081700 [exp]	16.43	0.8506
AT1G43580			Sphingomyelin synthetase famil...		Potri.005G193300 [exp]	17.94	0.8457
AT1G51980			Insulinase (Peptidase family M...		Potri.008G193200 [exp]	19.69	0.8024

Compare expression of checked genes

Potri.008G043800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.