Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07900 219 / 1e-72 AS2 LBD1 LOB domain-containing protein 1 (.1) AT2G28500 205 / 9e-67 AS2 LBD11 LOB domain-containing protein 11 (.1) AT2G30130 166 / 6e-52 AS2 PCK1, LBD12, ASL5 PEACOCK 1, Lateral organ boundaries (LOB) domain family protein (.1) AT1G16530 155 / 4e-48 AS2 ASL9, LBD3 LOB DOMAIN-CONTAINING PROTEIN 3, ASYMMETRIC LEAVES 2-like 9 (.1) AT1G31320 145 / 4e-44 AS2 LBD4 LOB domain-containing protein 4 (.1) AT2G30340 147 / 2e-43 AS2 LBD13 LOB domain-containing protein 13 (.1) AT5G63090 142 / 2e-42 AS2 LOBB, LOB Lateral organ boundaries (LOB) domain family protein (.1), Lateral organ boundaries (LOB) domain family protein (.2), Lateral organ boundaries (LOB) domain family protein (.3), Lateral organ boundaries (LOB) domain family protein (.4) AT3G27650 137 / 4e-41 AS2 LBD25 LOB domain-containing protein 25 (.1) AT2G23660 141 / 6e-41 AS2 LBD10 LOB domain-containing protein 10 (.1.2) AT2G40470 135 / 1e-39 AS2 ASL11, LBD15 ASYMMETRIC LEAVES2-LIKE 11, LOB domain-containing protein 15 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G217700 [exp] 322 / 7e-113 AT1G07900 203 / 1e-66 LOB domain-containing protein 1 (.1) Potri.007G066700 [exp] 168 / 3e-53 AT1G31320 216 / 3e-73 LOB domain-containing protein 4 (.1) Potri.005G097800 [exp] 166 / 2e-52 AT1G31320 193 / 6e-64 LOB domain-containing protein 4 (.1) Potri.010G184400 [exp] 162 / 6e-51 AT2G30130 227 / 7e-77 PEACOCK 1, Lateral organ boundaries (LOB) domain family protein (.1) Potri.008G072800 [exp] 161 / 3e-50 AT2G30130 229 / 8e-78 PEACOCK 1, Lateral organ boundaries (LOB) domain family protein (.1) Potri.001G081400 [exp] 161 / 4e-50 AT1G31320 228 / 3e-77 LOB domain-containing protein 4 (.1) Potri.003G149000 [exp] 160 / 6e-50 AT1G31320 241 / 2e-82 LOB domain-containing protein 4 (.1) Potri.001G281600 [exp] 159 / 1e-49 AT2G30130 248 / 4e-85 PEACOCK 1, Lateral organ boundaries (LOB) domain family protein (.1) Potri.009G076900 [exp] 157 / 1e-48 AT2G30130 228 / 2e-77 PEACOCK 1, Lateral organ boundaries (LOB) domain family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011645 [exp] 219 / 2e-72 AT2G28500 205 / 4e-67 LOB domain-containing protein 11 (.1) Lus10040373 [exp] 217 / 3e-71 AT2G28500 211 / 7e-69 LOB domain-containing protein 11 (.1) Lus10036130 [exp] 204 / 3e-66 AT2G28500 207 / 1e-67 LOB domain-containing protein 11 (.1) Lus10031191 [exp] 163 / 4e-51 AT1G31320 199 / 2e-66 LOB domain-containing protein 4 (.1) Lus10031855 [exp] 163 / 5e-51 AT2G30130 220 / 4e-74 PEACOCK 1, Lateral organ boundaries (LOB) domain family protein (.1) Lus10040638 [exp] 162 / 2e-50 AT1G31320 244 / 1e-83 LOB domain-containing protein 4 (.1) Lus10018275 [exp] 161 / 5e-50 AT1G31320 243 / 2e-83 LOB domain-containing protein 4 (.1) Lus10031285 [exp] 161 / 5e-50 AT2G30130 226 / 3e-76 PEACOCK 1, Lateral organ boundaries (LOB) domain family protein (.1) Lus10031769 [exp] 160 / 5e-50 AT1G31320 193 / 8e-64 LOB domain-containing protein 4 (.1) Lus10007525 [exp] 159 / 4e-49 AT2G30130 204 / 1e-67 PEACOCK 1, Lateral organ boundaries (LOB) domain family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03195 [poplar] [flax] LOB Lateral organ boundaries (LOB) domain
Representative CDS sequence Show only first row Show all	>Potri.008G043900.1 pacid=42808760 polypeptide=Potri.008G043900.1.p locus=Potri.008G043900 ID=Potri.008G043900.1.v4.1 annot-version=v4.1 ATGGATATGCTTCAGAAACCTGCAGCAATATCACCAGTCAAAGCTCCCTCACAATTCTCCTGCTCTCCGTCTTCTTCTTCTTCACCACCTTCTTGTCATC ATTCTTGTCCAAGTACTTTTCATTCTCCTTCGAAGTCTAATTCACCAGGTCTTACTTCACCTTCAGCTGCCACTCTCCCTCCTCCTCCAGTTGTTATTAC CCCTTGTGCTGCCTGCAAAATCCTTCGCCGGCGATGCGTTGACAAGTGTGTTTTAGCTCCTTATTTCCCTCCTTCTGAGCCATATAAGTTCACCATTGCT CATAGGGTCTTTGGAGCTAGCAACATCATCAAGTTTTTGCAGGAGCTGCCAGAGTCTCAGAGAGCAGATGCAGTAAGCAGCATGGTTTATGAGGCTAGTG CTAGGATTAGAGACCCAGTTTACGGCTGTGCTGGTGCGATCTCTCAGCTTCAAAAACAAGTTAGTGACCTCCAAGCACAACTTGCTAAGGCACAAGCTGA GGTGGTGAACATGCAATGCCAACAAGCCAATCTAGTTGCTTTACTTTGCATGGAAATGAAACAATCTCAACAAGAACCCATCTTGCAACAACATCAATAC ATTGACACGAGCTGCTTTCTTGACGAGAACAATCTGGGCGCATCATGGGAACCTCTTTGGACATGA
AA sequence Show only first row Show all	>Potri.008G043900.1 pacid=42808760 polypeptide=Potri.008G043900.1.p locus=Potri.008G043900 ID=Potri.008G043900.1.v4.1 annot-version=v4.1 MDMLQKPAAISPVKAPSQFSCSPSSSSSPPSCHHSCPSTFHSPSKSNSPGLTSPSAATLPPPPVVITPCAACKILRRRCVDKCVLAPYFPPSEPYKFTIA HRVFGASNIIKFLQELPESQRADAVSSMVYEASARIRDPVYGCAGAISQLQKQVSDLQAQLAKAQAEVVNMQCQQANLVALLCMEMKQSQQEPILQQHQY IDTSCFLDENNLGASWEPLWT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G07900	AS2	LBD1	LOB domain-containing protein ...		Potri.008G043900 [exp]	0	1
AT5G24080			Protein kinase superfamily pro...		Potri.012G034901 [exp]	1.00	0.9349
AT4G37850	bHLH	bHLH025	basic helix-loop-helix (bHLH) ...		Potri.009G081400 [exp]	1.41	0.9309
AT4G18170	WRKY	ATWRKY28, WRKY2...	WRKY DNA-binding protein 28 (....		Potri.005G203200 [exp]	2.44	0.9009
AT1G04560			AWPM-19-like family protein (....		Potri.010G064200 [exp]	3.16	0.8594
AT5G52300		LTI65, RD29B	RESPONSIVE TO DESSICATION 29B,...		Potri.012G141300 [exp]	5.29	0.8938
AT4G21440	MYB	ATMYB102, ATM4	A. THALIANA MYB 4, MYB-like 10...		Potri.011G041600 [exp]	5.47	0.8824
AT5G52390			PAR1 protein (.1)		Potri.012G141800 [exp]	5.65	0.8283
AT2G36640		ATECP63	embryonic cell protein 63 (.1)		Potri.015G060600 [exp]	11.40	0.8403	ATECP63.1
AT5G26720			unknown protein		Potri.013G000200 [exp]	12.24	0.7144
AT4G21440	MYB	ATMYB102, ATM4	A. THALIANA MYB 4, MYB-like 10...		Potri.004G033100 [exp]	12.40	0.8777	MYB.53

Compare expression of checked genes

Potri.008G043900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.