Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G63220 462 / 5e-165 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G217400 [exp] 627 / 0 AT5G63220 464 / 9e-166 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040371 [exp] 486 / 3e-174 AT5G63220 432 / 9e-153 unknown protein Lus10036505 [exp] 485 / 1e-173 AT5G63220 442 / 1e-156 unknown protein Lus10023490 [exp] 484 / 2e-173 AT5G63220 429 / 8e-152 unknown protein Lus10041421 [exp] 503 / 5e-170 AT2G16880 668 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04190 [poplar] [flax] DUF410 Protein of unknown function (DUF410)
Representative CDS sequence Show only first row Show all	>Potri.008G044100.1 pacid=42806539 polypeptide=Potri.008G044100.1.p locus=Potri.008G044100 ID=Potri.008G044100.1.v4.1 annot-version=v4.1 ATGTCGCGACAAAGACCAGGGAAGGCTCCTCTGCCTCCAGCTGAAGTGAATATTGAGAAATTGGAGAATGTGATAAATGAGGGTAATTACTATGGAGCTC AACAGATGTACAAGTCTATCAGTGCAAGATATGTATCTGCTCAAAGACATTCTGAAGCTTTGGACATTCTTCACTCGGGTGCGTGCCTCCAGCTGAAAAA CAGCCAGGTTACTTGTGGGTCGGAGCTTGCTGTGATCTTTGTGGAGACGCTTGTTAAAGCAAAAGTTCCTTATGATGATGATGTACTTGATCGCATCAGA AAAATCTATAAGACATTTCCTCAGATACCTTTGCCACAAGACTTGGGGGAAGATGACGATATGCAACAACTCAATGAAGCCCTTGGGGCTGCAAAAACAC GTGTCGAGTGCTGCTTGTCATTCTTAAAAGCTGCTATCAAGTGGTCTGCAGAGTTTGGAGCTCATAGGAATGGATCTCCAGAAATACATTTTATGCTAGC TGAATATGTTTATTCTGAATCTCCTGAGCTGGACATGACTAGAGTATCATATCATTTTGTTAGAGGCAACAACCCAAAGAAGTTTGCATCTACTATAGTA AATTTTATGGGCAAGTGTTATCCCGGTGAAGAAGATTTGGCTATTGCACGAGCAATTTTAATGTATTTATCTATGGGTAATCTCAGAGATGCTAATTTTC TAATGGACGAGCTAAAGAAACATGCACAGTACAAGGAGCATGACCTTCCCCAATCAGATTTGATCCAATTCATCAATTATCTTCTGCCAACGTTGCAGAG AGATGCTTTACCACTTTTTAATATGCTGAGAACAAATTATAAGTCAAGTATAGACAGAGAACCTGCATTCAACGAGCTACTAGATGAAATTGCAGAGTTG TTCTATGGAGTGCAACGTAGAAATCCCTTGCAAGGGATGTTTGGAGATATTTTCCAGATGATGGGCTGA
AA sequence Show only first row Show all	>Potri.008G044100.1 pacid=42806539 polypeptide=Potri.008G044100.1.p locus=Potri.008G044100 ID=Potri.008G044100.1.v4.1 annot-version=v4.1 MSRQRPGKAPLPPAEVNIEKLENVINEGNYYGAQQMYKSISARYVSAQRHSEALDILHSGACLQLKNSQVTCGSELAVIFVETLVKAKVPYDDDVLDRIR KIYKTFPQIPLPQDLGEDDDMQQLNEALGAAKTRVECCLSFLKAAIKWSAEFGAHRNGSPEIHFMLAEYVYSESPELDMTRVSYHFVRGNNPKKFASTIV NFMGKCYPGEEDLAIARAILMYLSMGNLRDANFLMDELKKHAQYKEHDLPQSDLIQFINYLLPTLQRDALPLFNMLRTNYKSSIDREPAFNELLDEIAEL FYGVQRRNPLQGMFGDIFQMMG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G63220			unknown protein		Potri.008G044100 [exp]	0	1
AT1G16000			unknown protein		Potri.003G183501 [exp]	2.00	0.9175
AT4G34490		ATCAP1	cyclase associated protein 1 (...		Potri.004G153900 [exp]	4.47	0.8534	CAP1.1
AT5G47830			unknown protein		Potri.002G123400 [exp]	5.47	0.8678
AT1G71900			Protein of unknown function (D...		Potri.013G114100 [exp]	5.74	0.8723
AT5G49890		ATCLC-C, CLC-C	chloride channel C (.1)		Potri.003G001500 [exp]	9.16	0.8451	CLC.3
AT2G43310			Ribosomal L18p/L5e family prot...		Potri.017G030200 [exp]	9.48	0.8378
AT1G73320			S-adenosyl-L-methionine-depend...		Potri.017G153900 [exp]	10.95	0.8450
AT2G26990		COP12, ATCSN2, ...	FUSCA 12, CONSTITUTIVE PHOTOMO...		Potri.009G020900 [exp]	13.67	0.7552
AT3G48970			Heavy metal transport/detoxifi...		Potri.015G144300 [exp]	16.43	0.8241
AT5G50130			NAD(P)-binding Rossmann-fold s...		Potri.015G081102 [exp]	16.52	0.7838

Compare expression of checked genes

Potri.008G044100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.