Plant FIBer expression Database

Potri.008G044500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G38890 107 / 1e-25 unknown protein
AT3G53320 71 / 1e-12 unknown protein
AT2G37070 50 / 3e-06 unknown protein
AT5G60150 45 / 0.0002 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G217000
[exp]
698 / 0 AT2G38890 92 / 2e-20 unknown protein
Potri.006G131650
[exp]
93 / 3e-19 AT3G53320 146 / 1e-36 unknown protein
Potri.016G085600
[exp]
62 / 1e-09 AT3G53320 174 / 4e-46 unknown protein
Potri.005G131500
[exp]
59 / 8e-09 AT5G60150 106 / 9e-23 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10023488
[exp]
109 / 3e-25 AT2G38890 100 / 3e-23 unknown protein
Lus10023170
[exp]
82 / 4e-16 AT3G53320 133 / 1e-32 unknown protein
Lus10026478
[exp]
77 / 2e-14 AT3G53320 56 / 8e-08 unknown protein
Lus10019909
[exp]
70 / 4e-12 AT3G53320 93 / 1e-19 unknown protein
PFAM info
Representative CDS sequence
>Potri.008G044500.1 pacid=42807069 polypeptide=Potri.008G044500.1.p locus=Potri.008G044500 ID=Potri.008G044500.1.v4.1 annot-version=v4.1
ATGTCCCCTGTAAGAAATTTTCAAGATTTTCAATTCTCAGAAGTTTCAGCGAGTAGAAAGAAAGTCGATGTTCAGAGCCTGGATCCTCAGCATATGCAGA
ATCATGTTGATAGAGTTGGACATAAAGAGACGGATACTTCAGAGTCTGAATCTGAGTTTAACTTGCGCAAAAGTTTGGCATGGGACAGTGCCTTCTTCAC
TAGTCCAGGAGTTCTGGACCCTGAAGAGTTGGAGACGATTAGTATTCGGGTTGTGGATAATGGAGTAGACACAGCTGGGGGTGGGGATCTGAGGTCTGTA
CCCTCTCGGTCTGCAGGACCAGAAGGGAAAAGTGCAATTGATGAGTGCAGCTTGCGCAAAAGTTTAGCTTGGGATAGTGCCTTCTTTACAAGTTCAGGAG
TTTTGAATGCTGCGGAGTTGTCTCTTGTTAACGGAGGATTTAGACTATCACAAGGACATACACTTCCTGGGATTAAAGACGTCCGGAGGTCTGCTGATTC
AAACTCAACAAGAAATGCCGATGCTTACTCCCTTGCAAGCCTTGAGATTGATCTTTTTGACAATATGAGAGCGTCCATGCAGAAATCAAACGATGCATCA
TCCACTAGGGAAACTTCAACTAGAAAAGTTAGAAGAGAAAATGAAACGCGAAGGGGTAATACTTCAAAAACATCGGATGCTTCCTCTCGATTAAGACCAA
AGCAGGGACCTAATAAAGAATCCAAATCGTTTATCAAGTCACCAAATATATTCTGCCAAAATCGCAATCTATCCGCAGCTCCCAACAAAAGGGCCTCTTC
GGGTGCAAACCATGTTAAATTGGAAGACAAAGGTGCACAAGCTGCTTCTGGGAGAACCAAGATTGTGTCAAAGAAAACTTGTATCAGGGATTCATGCAGT
ATTATCCGTAGTTCAACACCACCAGTGAAATCATCTTCTTCAGCTGCACCCTTTGGGAAAGAGTTTGGAGGATCTGGCTGTGCTCCAAATTTCACTGTTA
AATCTTCTCCAGATTCTCTGAGGAGAACAATTAATTCCCAGGTCTCTGCTTCGGCTTCAATCTCTAGAACTCCCCGACAACTTTCGGCTGGAAACATAAA
AGAGCTGGTGAATTCTAGCTACTCTACTTGTTTGTTGTCCACACCCAAGTCGTCATCCTGTACATCGCCTGCTAGTTCCACAGATGGATGCTCCTCAGAA
TCATCTTCCATAATTCTCAACCCAAGATCTGGTGCCATTCATGCAACTACAGCATGCAGAGGGATTTCTTTCAGCAAGGATGCCTTTCAAATATCAGATT
CTAAGAGACGTCAATGCAATGAATCTTATTTGGTACATGAAAGTCATGAAACAAAGTTCATGAACGCACAACTCAATAAAATCCCAGAGCGAACCAGTCT
TATCGCATCCATTGTTTCAAAAGGTTTACAATCTTCAAGTCTCCGAATGCCATCGCCAAAGATTGGATATTTTGATGCGGGAAATTCCGTGGATATAACA
CCAAATGGAGGCCTGAAGTTTTCTGGTGTAAAATCCACTTCTTCCAAAAACAGAAGTGGTATTAGTAATGCAAATGGAGCTGCAGATAGAACAAGAAATA
GAATGCATCAATTTGTGGGAGCCACATCGATATCTGTAAATAGAGCAGGCGCAAAGGAGCCAGTCTGCCCACAGGAGAAGAAGCAACCTTTGAAGGAGCT
TGAAGTTGTTAAGGCACATGGTCCTGAAAATAAAGTGCATAGATTTAACGAAGATAACAAAGAGAATATAGGTAGTTTTGAAAATCAGGTTGATGACCTG
AGTAGACGTATGGAAGGCATTGCTTTTTAG
AA sequence
>Potri.008G044500.1 pacid=42807069 polypeptide=Potri.008G044500.1.p locus=Potri.008G044500 ID=Potri.008G044500.1.v4.1 annot-version=v4.1
MSPVRNFQDFQFSEVSASRKKVDVQSLDPQHMQNHVDRVGHKETDTSESESEFNLRKSLAWDSAFFTSPGVLDPEELETISIRVVDNGVDTAGGGDLRSV
PSRSAGPEGKSAIDECSLRKSLAWDSAFFTSSGVLNAAELSLVNGGFRLSQGHTLPGIKDVRRSADSNSTRNADAYSLASLEIDLFDNMRASMQKSNDAS
STRETSTRKVRRENETRRGNTSKTSDASSRLRPKQGPNKESKSFIKSPNIFCQNRNLSAAPNKRASSGANHVKLEDKGAQAASGRTKIVSKKTCIRDSCS
IIRSSTPPVKSSSSAAPFGKEFGGSGCAPNFTVKSSPDSLRRTINSQVSASASISRTPRQLSAGNIKELVNSSYSTCLLSTPKSSSCTSPASSTDGCSSE
SSSIILNPRSGAIHATTACRGISFSKDAFQISDSKRRQCNESYLVHESHETKFMNAQLNKIPERTSLIASIVSKGLQSSSLRMPSPKIGYFDAGNSVDIT
PNGGLKFSGVKSTSSKNRSGISNANGAADRTRNRMHQFVGATSISVNRAGAKEPVCPQEKKQPLKELEVVKAHGPENKVHRFNEDNKENIGSFENQVDDL
SRRMEGIAF

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G38890 unknown protein Potri.008G044500
[exp]
0 1
AT3G58480 calmodulin-binding family prot... Potri.006G197500
[exp]
4.12 0.9691
AT1G03180 unknown protein Potri.005G208700
[exp]
8.36 0.9653
AT4G25120 ATSRS2 ARABIDOPSIS THALIANA SUPPRESSO... Potri.012G114100
[exp]
8.66 0.9549
Potri.014G065300
[exp]
10.72 0.9645
AT4G33280 B3 REM16 AP2/B3-like transcriptional fa... Potri.002G129900
[exp]
15.23 0.9481
AT4G32272 Nucleotide/sugar transporter f... Potri.018G127400
[exp]
15.96 0.7675
Potri.014G163733
[exp]
16.61 0.9642
AT5G11390 WIT1 WPP domain-interacting protein... Potri.004G111350
[exp]
18.13 0.9637
AT4G30130 Protein of unknown function (D... Potri.018G147749
[exp]
21.21 0.9588
AT5G20940 Glycosyl hydrolase family prot... Potri.009G154032
[exp]
23.21 0.9620

Potri.008G044500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.