Plant FIBer expression Database

Potri.008G045000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G13620 171 / 1e-50 unknown protein
AT1G64870 167 / 6e-49 unknown protein
AT3G45200 157 / 4e-45 unknown protein
AT1G49290 114 / 1e-28 unknown protein
AT5G11220 91 / 7e-21 unknown protein
AT5G24355 67 / 8e-14 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G216400
[exp]
535 / 0 AT1G64870 167 / 3e-49 unknown protein
Potri.006G252800
[exp]
180 / 3e-54 AT1G64870 261 / 6e-87 unknown protein
Potri.001G155600
[exp]
136 / 3e-37 AT5G13620 92 / 3e-21 unknown protein
Potri.014G054900
[exp]
100 / 4e-24 AT1G64870 91 / 4e-21 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10009296
[exp]
159 / 2e-45 AT1G64870 235 / 3e-76 unknown protein
Lus10002022
[exp]
157 / 9e-45 AT1G64870 241 / 3e-78 unknown protein
Lus10041678
[exp]
154 / 7e-44 AT1G64870 237 / 6e-77 unknown protein
Lus10036502
[exp]
109 / 2e-28 AT1G49290 84 / 1e-19 unknown protein
Lus10041424
[exp]
103 / 2e-25 AT1G49290 90 / 7e-21 unknown protein
Lus10021560
[exp]
101 / 4e-24 AT1G49290 125 / 4e-33 unknown protein
Lus10017168
[exp]
100 / 3e-23 AT5G13620 125 / 6e-33 unknown protein
Lus10002905
[exp]
56 / 2e-08 AT5G11200 423 / 5e-145 DEAD/DEAH box RNA helicase family protein (.1.2.3)
PFAM info
Representative CDS sequence
>Potri.008G045000.1 pacid=42805956 polypeptide=Potri.008G045000.1.p locus=Potri.008G045000 ID=Potri.008G045000.1.v4.1 annot-version=v4.1
ATGGAATCCTCGGCGGTGCCCTCTTCTCCCTCTGTTTTGAATTCCATGGTGACCCCGGAAGAGTTCAAGATTTTTCACACCATTGACAGAACCCTCTATA
CTAGACTTATTGTCAATCTTGATCGCGACCCCGCAGAGTCCATGCAAGTTATGGCCTTATGGATTTGGCTTGAAAAGGAGGCACGTGATAATTTAGTGGA
CAAAATGTTGTCATTGCCTGATGCCCTTATCAATTCTCTAGCAGATGAGGCTGTTCTTTGCTTGAATTGCATAGAGACCGACCGGTTCCACTTCTCTCCA
GAAAGTATGAACGATAAGGTTCCTTTGACCCAACAGTTGACAAAAACTGGCCTCTCCCTTCGTTTTTTCCATGACAATCGACTTGGTATTCTTCGCGCGC
TCACAAAGATCATCGACGAAGTTTGCGCAAGAGCTTTCGAAGATATTTCGCGACAAGTGATCGAAAAAAAGGCTGCTGGAAAAGGAAATAATATTGTTGC
TGAAAATGTTATTGGTCAAGAAGGGAACCCTTTGAATTATTATGGTCCAGCGATTAATCCTGTGCTGTGTTATAATTCTGCTGCTGCAGCTGCTGGTGTT
TATGGTCTGGGGATCAGTACTCCCCAATTCATGGCGCCTAATATTGGAATTTTGCCTGCTTATGACCCTTATGATCTTTCAGTTCAGAGGCAGATTACGA
GTACTGAGAATATTGCTGGAGTACTGAATCGTATAAAGATTATTAATGGTGATCACCAGGGAGAGAAGGACGTGTATGCTGATAATAGGACTGTTTTCTT
GACGTTCTCTAAAGGGTACCCTATTTCAGAAGATGAAATCAGAGACTTTTTCACCAAGAAGCATGGAGATTGCATTGAGGCAATTTATATGCAAGAAGTC
TCGGCAGAGGAGCAGCCACTGTATGCACGCCTTGTTGTAACCTCTGCTGCCGTCATTCACAGCGTTCTTCAGGGACAAAGCAAGGCAAAGTTCACCATTA
ATGGAAAACATGTTTGGGCCAGGAAATATGTCCCCAAGAATCCTAAGTCGTCGTCTCCACCAAAGTCACCAACATCACCACAGCCGACCTCACCCGCCGC
TGAACCATCATGCGTGAACTGA
AA sequence
>Potri.008G045000.1 pacid=42805956 polypeptide=Potri.008G045000.1.p locus=Potri.008G045000 ID=Potri.008G045000.1.v4.1 annot-version=v4.1
MESSAVPSSPSVLNSMVTPEEFKIFHTIDRTLYTRLIVNLDRDPAESMQVMALWIWLEKEARDNLVDKMLSLPDALINSLADEAVLCLNCIETDRFHFSP
ESMNDKVPLTQQLTKTGLSLRFFHDNRLGILRALTKIIDEVCARAFEDISRQVIEKKAAGKGNNIVAENVIGQEGNPLNYYGPAINPVLCYNSAAAAAGV
YGLGISTPQFMAPNIGILPAYDPYDLSVQRQITSTENIAGVLNRIKIINGDHQGEKDVYADNRTVFLTFSKGYPISEDEIRDFFTKKHGDCIEAIYMQEV
SAEEQPLYARLVVTSAAVIHSVLQGQSKAKFTINGKHVWARKYVPKNPKSSSPPKSPTSPQPTSPAAEPSCVN

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G13620 unknown protein Potri.008G045000
[exp]
0 1
Potri.007G009000
[exp]
1.41 0.9073
AT1G01540 Protein kinase superfamily pro... Potri.017G146000
[exp]
4.24 0.7419
AT4G22080 RHS14 root hair specific 14 (.1) Potri.004G007300
[exp]
4.58 0.8933
AT5G47670 CCAAT NF-YB6, L1L "nuclear factor Y, subunit B6"... Potri.006G005000
[exp]
5.29 0.8933
AT4G12650 Endomembrane protein 70 protei... Potri.015G063002
[exp]
6.32 0.7031
AT3G02100 UDP-Glycosyltransferase superf... Potri.010G084900
[exp]
8.00 0.8649
AT5G26330 Cupredoxin superfamily protein... Potri.006G259000
[exp]
10.19 0.7803
AT4G33550 Bifunctional inhibitor/lipid-t... Potri.009G048800
[exp]
10.95 0.7828
AT3G57450 unknown protein Potri.001G263404
[exp]
11.40 0.6762
AT1G43730 RNA-directed DNA polymerase (r... Potri.004G000150
[exp]
13.67 0.7481

Potri.008G045000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.