Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G45650 494 / 2e-170 NAXT1 nitrate excretion transporter1 (.1) AT3G45660 484 / 1e-166 Major facilitator superfamily protein (.1) AT3G45680 480 / 9e-165 Major facilitator superfamily protein (.1) AT3G45700 462 / 4e-158 Major facilitator superfamily protein (.1) AT3G45710 459 / 2e-156 Major facilitator superfamily protein (.1) AT3G45720 442 / 6e-150 Major facilitator superfamily protein (.1) AT3G45690 409 / 2e-137 Major facilitator superfamily protein (.1) AT1G18880 306 / 7e-97 NRT1.9 nitrate transporter 1.9, Major facilitator superfamily protein (.1) AT5G01180 299 / 4e-94 ATPTR5 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) AT1G69870 296 / 2e-92 NRT1.7 nitrate transporter 1.7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G351200 [exp] 316 / 1e-100 AT5G62680 677 / 0.0 Major facilitator superfamily protein (.1) Potri.017G076800 [exp] 310 / 3e-98 AT3G47960 680 / 0.0 Major facilitator superfamily protein (.1) Potri.012G071500 [exp] 308 / 2e-97 AT5G62680 779 / 0.0 Major facilitator superfamily protein (.1) Potri.010G034700 [exp] 302 / 5e-95 AT1G69870 702 / 0.0 nitrate transporter 1.7 (.1) Potri.006G034000 [exp] 299 / 1e-93 AT1G68570 656 / 0.0 Major facilitator superfamily protein (.1) Potri.001G185700 [exp] 289 / 5e-90 AT1G52190 785 / 0.0 Major facilitator superfamily protein (.1) Potri.009G042400 [exp] 287 / 9e-90 AT3G54140 832 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.010G126300 [exp] 283 / 3e-88 AT1G68570 901 / 0.0 Major facilitator superfamily protein (.1) Potri.012G071400 [exp] 281 / 2e-87 AT5G62680 689 / 0.0 Major facilitator superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037221 [exp] 311 / 3e-98 AT1G69870 709 / 0.0 nitrate transporter 1.7 (.1) Lus10015351 [exp] 307 / 4e-97 AT1G18880 682 / 0.0 nitrate transporter 1.9, Major facilitator superfamily protein (.1) Lus10036705 [exp] 308 / 9e-97 AT1G69870 709 / 0.0 nitrate transporter 1.7 (.1) Lus10017817 [exp] 303 / 5e-95 AT1G68570 637 / 0.0 Major facilitator superfamily protein (.1) Lus10036669 [exp] 291 / 8e-91 AT5G62680 758 / 0.0 Major facilitator superfamily protein (.1) Lus10018838 [exp] 280 / 3e-87 AT1G68570 571 / 0.0 Major facilitator superfamily protein (.1) Lus10035516 [exp] 279 / 1e-86 AT5G01180 913 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) Lus10021132 [exp] 279 / 2e-86 AT3G54140 814 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Lus10033106 [exp] 278 / 6e-86 AT5G62680 761 / 0.0 Major facilitator superfamily protein (.1) Lus10030947 [exp] 275 / 1e-84 AT2G02040 884 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF00854 [poplar] [flax] PTR2 POT family
Representative CDS sequence Show only first row Show all	>Potri.008G045100.1 pacid=42807865 polypeptide=Potri.008G045100.1.p locus=Potri.008G045100 ID=Potri.008G045100.1.v4.1 annot-version=v4.1 ATGGAATCCTTGCAAACCACCTCCATTCCAAGTGACCAAGCACCATCAATGAAGCACAGCAAACGAGGAGGATGGACTACCTTCCCTTTCATTATAGGAG CTGTGATGGGTCTTACACTAGCAGCCGGAGCGGGGTCAGCGAATTTGATAGTATTTTTGGTAACTGTAATGAACATAAAGAGCATTAATGCTACTCAAAT CAACAATATCATAATTGGTTGCTACAGTCTCTTTCCCGTTGCTGGGGCTGTCATTGCTGACTCTTTCTTCAGCTCCTTCTATGTCGTTAGTGTTTTCGCC TTTGTTTCTTTACTGGGCTTGATCATGCTAACTCTAGCATCTACAATCCATTCCTTGAGACCCCCAACATGTGTGATTGGTTCACTTGCTTGTGAAGCCC CATCAAAGCTTCAATATGCAGTACTCTACTTGGCGCTAGCATTAGCTTCCTTAGGAGTAGGAGGCACACGCTTCACGATATCGACTATGGGAGCAGACCA ATTCAAGAAGCCAAATGAGCAAGGAACTTTCTTTAGTTGGTATTTCTTCACTCTGTACCTCGCCAGTGCCATAAGCTTGACGGCTATCATCTACGTTCAG GACAGTGTGAGCTGGGGATTAGGGTTTGGCATTGGTGTTGTTGCTAATGCCATTGGATTAGCCGTGTTTTTGTTGGGAAAAAGGTTTTATTGCCATACGA AGCCCAAGGGAAGTCCCTTTGTGGGCATTGCTCGTGTTTTGGTTGCAGCTATTAGAAAAAGAAGGAAACTGGAAACTTTTCAAAGCCAGGGTTATTTTCA CGGAGACAACACAAAGGCGATTAGCAGTCCAACTGAAAGTCTCAGATTCTTGAATTGTGCAGCGCTAAGATATGAAGATGACCGAAAATCAGACGGCTCC TATTCAAGTTCTCGGTGGCTATGTACAGTGGAGGAAGTTGAGGATCTCAAGACCCTGATCAGAATCATGCCACTGTGGTCTAGCGGTATCTTATTGAGTA CTACTATAGCTATGATTAACAGCCTCACAGTCCTCCAAGCCCTAACCATGGACAGGCACCTTGGACCGCACTTCAAAATCCCAGCTGGGTCATTCCTGGT ATTTAGCATTTTAGCCACAGCACTCTCAATCTCCATCATCGATCGTTTCTTGCTCCCAATGTGGAAAAATTTGACTCGAAGATCACTGAAACCCCTCCAA CAAATAGGTATTGGCCATGTCATTAACATATTCGCCATGGTGGGATCTGCCTTGGTGGAGACAAGGAGGCTTCGTGTGGTTCGAACCCATCACCTTAACG GTGAACCACCCGGCTCAGTCGTGCCGATGTCAGGTCTCTGGCTTGTGGTCCCGTTATTCGTGATCGGCGTTGGTGAAGCTTTTCATTTTCCAGGACAAGT TGCCTTGTATTACCAAGAATTTCCCACGTCGCTAAGAAGCACTTCTACTGCTATGATATCACTGTTAATTGCGATTGGATATTACCTAAGCACAGCAATA ATCGATTCGGTACGCCGGTCTACAGGATGGTTGCCTGATAACATCAACGACGGGAGATTAGATTATGTATTTTGGTTGTTGACGGCGATAGCGTTCGTGA ACTTTGGGTACTACCTGTTATGTACCAAGTTTTTCAAGTACCAGAACACTGAGAATCATGAGAATGAGGCTTCTGCTTAG
AA sequence Show only first row Show all	>Potri.008G045100.1 pacid=42807865 polypeptide=Potri.008G045100.1.p locus=Potri.008G045100 ID=Potri.008G045100.1.v4.1 annot-version=v4.1 MESLQTTSIPSDQAPSMKHSKRGGWTTFPFIIGAVMGLTLAAGAGSANLIVFLVTVMNIKSINATQINNIIIGCYSLFPVAGAVIADSFFSSFYVVSVFA FVSLLGLIMLTLASTIHSLRPPTCVIGSLACEAPSKLQYAVLYLALALASLGVGGTRFTISTMGADQFKKPNEQGTFFSWYFFTLYLASAISLTAIIYVQ DSVSWGLGFGIGVVANAIGLAVFLLGKRFYCHTKPKGSPFVGIARVLVAAIRKRRKLETFQSQGYFHGDNTKAISSPTESLRFLNCAALRYEDDRKSDGS YSSSRWLCTVEEVEDLKTLIRIMPLWSSGILLSTTIAMINSLTVLQALTMDRHLGPHFKIPAGSFLVFSILATALSISIIDRFLLPMWKNLTRRSLKPLQ QIGIGHVINIFAMVGSALVETRRLRVVRTHHLNGEPPGSVVPMSGLWLVVPLFVIGVGEAFHFPGQVALYYQEFPTSLRSTSTAMISLLIAIGYYLSTAI IDSVRRSTGWLPDNINDGRLDYVFWLLTAIAFVNFGYYLLCTKFFKYQNTENHENEASA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G45650		NAXT1	nitrate excretion transporter1...		Potri.008G045100 [exp]	0	1
AT5G06860		ATPGIP1, PGIP1	polygalacturonase inhibiting p...		Potri.016G049400 [exp]	2.23	0.9231	PGIP.3
AT1G03230			Eukaryotic aspartyl protease f...		Potri.019G064700 [exp]	3.46	0.9268
AT4G28650			Leucine-rich repeat transmembr...		Potri.002G256500 [exp]	4.24	0.8786
AT3G54960		ATPDI1, ATPDIL1...	ARABIDOPSIS THALIANA PROTEIN D...		Potri.010G222100 [exp]	7.48	0.9034
AT1G75520		SRS5	SHI-related sequence 5 (.1)		Potri.005G234200 [exp]	8.00	0.8788
AT3G02040		AtGDPD1, SRG3	Glycerophosphodiester phosphod...		Potri.001G325200 [exp]	8.60	0.8563	Pt-SRG3.1
AT3G03480		CHAT	acetyl CoA:(Z)-3-hexen-1-ol ac...		Potri.001G447832 [exp]	8.83	0.8869
AT4G11610		NTRB, ATNTRB	C2 calcium/lipid-binding plant...		Potri.001G105400 [exp]	9.38	0.8900
AT1G34300			lectin protein kinase family p...		Potri.016G102700 [exp]	10.95	0.8671
AT5G12460			Protein of unknown function (D...		Potri.009G051600 [exp]	12.64	0.8745

Compare expression of checked genes

Potri.008G045100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.