Plant FIBer expression Database

Potri.008G045200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G13610 435 / 2e-151 Protein of unknown function (DUF155) (.1)
AT1G69380 345 / 1e-116 RRG RETARDED ROOT GROWTH, Protein of unknown function (DUF155) (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G216300
[exp]
604 / 0 AT5G13610 424 / 3e-147 Protein of unknown function (DUF155) (.1)
Potri.008G092400
[exp]
364 / 2e-124 AT1G69380 505 / 2e-180 RETARDED ROOT GROWTH, Protein of unknown function (DUF155) (.1)
Potri.010G162500
[exp]
358 / 5e-122 AT1G69380 511 / 0.0 RETARDED ROOT GROWTH, Protein of unknown function (DUF155) (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10001978
[exp]
521 / 0 AT5G13610 457 / 4e-160 Protein of unknown function (DUF155) (.1)
Lus10030300
[exp]
511 / 0 AT5G13610 454 / 4e-159 Protein of unknown function (DUF155) (.1)
Lus10036803
[exp]
352 / 2e-119 AT1G69380 479 / 4e-170 RETARDED ROOT GROWTH, Protein of unknown function (DUF155) (.1)
Lus10037127
[exp]
323 / 2e-108 AT1G69380 415 / 2e-145 RETARDED ROOT GROWTH, Protein of unknown function (DUF155) (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF02582 DUF155 Uncharacterised ACR, YagE family COG1723
Representative CDS sequence
>Potri.008G045200.1 pacid=42807316 polypeptide=Potri.008G045200.1.p locus=Potri.008G045200 ID=Potri.008G045200.1.v4.1 annot-version=v4.1
ATGTGGCGGACCATTGATGCTCACTTGAGAACAGTCCGCTTACCTGTACGTACTGTCCTCCTCTCTCACCACCAATACCCTCCCTCCCTCCCTCCTCTTA
AACCACCAAAATCTCTCCATTTTTTTTCTCTCTCCGAAACCCTAACTATCTCCTCATCAACCCCCTATCCCCCCTCTCCAATTCTCGCTTTCACTACACG
CTGCATTAATAGTGTTGCTTTCGGCCGCGGTCGTAATTTGGTGCCTGTGAGGTGCATTTCTTCAATTTCGTCCTCCGCCGCTCCAAATCAGCAGCACACG
GCTGTGGGCTGGAATGAGCCGGTGACGTGTTCGGAGCTCGGTGATGGTGGTAAAGGCACGAATATCGAGGAGGACGCTCGGCAGTCCATTCCTGTTCGCG
CTTTTTTATTCTCTACTAGTGTGGATTTGAAAAGCTTAGTGGAGCAGAACAAGAAAAATTTTATACCACCAACATCGCGAATGACAAATTATGTTGTTCT
TAAGTTTGGGAACCTCTCTCAAGCACCTGGTCTGGGCTCTTGCATAAGTGGAAGTAATTGCTGTTACATGGTAGTGTTCCAATATGGATCCATCGTTTTG
TTTAATGTCCGTGAACACGAGGTTGATGAATATCTGAACCTTGTAAGGAAGCATGCCTCAGGATTGCTCCCTGAAACGAGGAAGGATGAGTATGAGGTGA
GAGAGAAGCCAACTCTAAACACATGGATGCAAGGTGGATTGGATTACATTATGCTGCAGTTCTTGAACACTGATGGAATACGGATGATTGGTAGTGTTCT
TGGTCAAAGTATAGCTCTTGACTACTATGGACGCCAGGTTGATGGAATGGTTGCTGAATTTACTGACATAAATCGTGGGATGGAAAAAACTGGAACATTT
TCTATGGACAGCAAAAAGCTTTTTCAAATAGTGGGGAAGGCCAATTCTAATCTTGCTGATGTGATTCTAAAGCTTGGGCTTTTTGAGAGATCAGACATAG
CTTGGAAAGATGCCAAATATGCTCAGATATGGGAATATCTCAGAGATGAATTCGAGTTAACTCAGAGATTTGCGAGTCTTGATTTTAAGCTGAAGTTTGT
TGAGCATAATATTCGCTTTCTTCAAGAAATTCTACAAAACAGGAAATCAGATTTTTTGGAATGGCTCATCATTGTGTTGATTAGCGTTGAAATCATTATA
TCCGTTTTCGATCTTGTTCAGAGATCGGGATTTAAATTCCTCTAA
AA sequence
>Potri.008G045200.1 pacid=42807316 polypeptide=Potri.008G045200.1.p locus=Potri.008G045200 ID=Potri.008G045200.1.v4.1 annot-version=v4.1
MWRTIDAHLRTVRLPVRTVLLSHHQYPPSLPPLKPPKSLHFFSLSETLTISSSTPYPPSPILAFTTRCINSVAFGRGRNLVPVRCISSISSSAAPNQQHT
AVGWNEPVTCSELGDGGKGTNIEEDARQSIPVRAFLFSTSVDLKSLVEQNKKNFIPPTSRMTNYVVLKFGNLSQAPGLGSCISGSNCCYMVVFQYGSIVL
FNVREHEVDEYLNLVRKHASGLLPETRKDEYEVREKPTLNTWMQGGLDYIMLQFLNTDGIRMIGSVLGQSIALDYYGRQVDGMVAEFTDINRGMEKTGTF
SMDSKKLFQIVGKANSNLADVILKLGLFERSDIAWKDAKYAQIWEYLRDEFELTQRFASLDFKLKFVEHNIRFLQEILQNRKSDFLEWLIIVLISVEIII
SVFDLVQRSGFKFL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G13610 Protein of unknown function (D... Potri.008G045200
[exp]
0 1
AT1G27070 5'-AMP-activated protein kinas... Potri.008G194300
[exp]
1.41 0.8407
AT1G45000 AAA-type ATPase family protein... Potri.009G120500
[exp]
2.82 0.8186
AT1G64720 CP5 Polyketide cyclase/dehydrase a... Potri.015G005000
[exp]
3.87 0.8250
Potri.009G125700
[exp]
4.47 0.8308
AT1G04290 Thioesterase superfamily prote... Potri.004G134132
[exp]
5.65 0.7998
AT2G20830 transferases;folic acid bindin... Potri.013G145700
[exp]
7.41 0.7944
AT5G04130 GYRB2 DNA GYRASE B2 (.1.2) Potri.006G039400
[exp]
7.93 0.7977
AT2G30942 Protein of unknown function (D... Potri.002G263100
[exp]
9.16 0.8043
AT1G18440 Peptidyl-tRNA hydrolase family... Potri.012G061100
[exp]
10.39 0.7935
AT1G06990 GDSL-like Lipase/Acylhydrolase... Potri.008G076600
[exp]
11.61 0.7788

Potri.008G045200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.