Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39260 1376 / 0 binding;RNA binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G216100 [exp] 1690 / 0 AT2G39260 1533 / 0.0 binding;RNA binding (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023481 [exp] 1016 / 0 AT2G39260 1537 / 0.0 binding;RNA binding (.1) Lus10040364 [exp] 1013 / 0 AT2G39260 1620 / 0.0 binding;RNA binding (.1) Lus10030801 [exp] 93 / 4e-22 AT2G39260 142 / 1e-40 binding;RNA binding (.1) Lus10030802 [exp] 48 / 4e-05 AT1G27070 204 / 2e-58 5'-AMP-activated protein kinase-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF02854 [poplar] [flax] MIF4G MIF4G domain CL0020 [poplar] [flax] TPR PF04050 [poplar] [flax] Upf2 Up-frameshift suppressor 2
Representative CDS sequence Show only first row Show all	>Potri.008G045400.4 pacid=42808617 polypeptide=Potri.008G045400.4.p locus=Potri.008G045400 ID=Potri.008G045400.4.v4.1 annot-version=v4.1 ATGGATCACCACGAAGACGAGAGCCGTGGTGGAAGTGTAACTCCTAGAAAGCAAGACGATGAGGAAGCGGTTGCTCGACTCGAGGAAATGAAGAAATCTA TCGAGGCAAAAGTTGCTCTTCGTCAAAGCAATTTGAATCCTGAAAGGCCTGATTCAGGATTTCTCAGGACACTGGATTCCAGCATTAAGCGCAATACTGC TGTTATCAAAAAATTAAAGCAGATAAATGAAGAACAGAAGGAAGGACTGATGGAAGAGTTACGAAATGTGAACCTTAGCAAATTTGTCAGTGAAGCTGTG ACATCCATTTGTGATGCAAAACTTAGAACTTCTGACATACAAGCAGCTGTTCAGATCTGTTCATTGCTTCATCAACGGTACAAAGACTTCTCGCCAAGCC TGGTACAGGGGCTCTTAAAGGTCTTTTTTCCTGGAAAATCAGGGGAAGACTTGGACGTGGACAAGAACTCAAAGGCTATGAAGAAGCGAAGCAGCTTAAA ACTGCTTTTGGAACTTTACTTTGTTGGAGTTACAGAAGACAGCAGTATTTTCATCAATATTATTAAGGATCTTACTAGTATAGAAAACTTGAAGGACAGA GATACTACTCAGACAAATTTGACTCTCCTTGCTAGTTTTGCTCGACAAGGAAGAGTTTTTCTGGGGCTTCCCCTATCTGGACAAGAAACCCAGGAAGAGT TTCTCAAGGGCCTTAGCATCACCACTGATCAAAAGAAAATCTTCAGGAAAGCCTTTCATACATATTATGATGTTGTCGCCGAACTACTTAAGTCAGAGCA TGCTTCACTTCGTCAAATGGAGCATGAAAATGCAAAGATGCTGAATGCTAAAGGAGAGCTGAGTGATGATAATGTTTCATCATATGAAAAGCTGCGAAAA TCTTATGACCAATTGTACCGTAATGTGTCATCTTTAGCAGAAGCACTTGATATGCAACCTCCAGTGATGCCAGAAGATGGTCATACAACTAGGGTTACTA GTGGGGAGGACGCTTCATCACCTGCAGCAGGGAAAGATACTTCTCTCCTTGAAGCTTTGTGGGATGATGAAGATACTAGAGCCTTCTATGAATGCTTACC AGATCTCAGAGCATTTGTTCCAGCAGTATTACTGGGAGAGGCAGAGCCAAAAGCAAATGAGCATTCTGCGAAGACTCAAGATCAACCAAGTGAGCTGGCA CCTGAATCAGATCAAGGCCAACCCACCCAAGATATGGCAGAGGTTTCTGCAGAGTCTGGCCCTTTGCAGGAGGGAAAAAGTACAGAGAAGGGGAAGGATA AGGAAGAAAAAGACAAAGAAAAGGTAAAAGATTCTGAAAAAGAGAAAGGGAAAGAAAAGGATGCAGAGAGAAAAGGAGAAAATGAGAAGGAGAAACTCAA AAGTCTTGAAGGGACTAATTTGGATGCTCTGTTACAGAGGCTTCCTGGTTGCGTCAGCCGTGACCTAATCGATCAATTGACTGTAGATTTTTGTTATCTA AATTCGAAGTCAAGTCGGAAGAAGCTTGTAAGGGCATTATTTAATGTACCCAGGACATCTCTAGAACTGCTTCCATACTACTCACGCATGGTTGCCACAC TCTCAACATGCATGAAGGATGTCTCTTCCATGCTCTTACAATTGTTAGAGGAGGAGTTCAATTTCTTAATAAATAAAAAGGATCAAATGAATATCGAGAC AAAGATCAGGAATATTAGATTTATTGGAGAGCTCTGCAAGTTCAGAATTGCGCCAGCAAGCACTGTTTTTAGTTGCTTGAAGGCTTGTTTAGATGATTTC ACTCACCATAACATTGATGTTGCTTGCAATCTTCTTGAGACATGTGGCCGTTTTCTGTATCGTACTCCTGAAACTACTGTACGCATGGCTAATATGTTGG AGATACTTATGCGCTTGAAAAATGTCAAAAATTTGGATCCTCGGCATAGCACCCTTGTAGAAAATGCTTACTATCTGTGCAAACCACCTGAAAGGTCTGC ACGAGTGTCTAAAGTCCGTCCTCCCTTGTATCAGTATATCAGAAAATTACTATTCTCTGATCTAGACAAGTCTTCCATTGAGCATGTGCTCCGGCAACTT CGTAAATTACCATGGAGTGAATGTGAGGCATATCTTTTAAAGTGTTTTATGAAGGTTCATAAAGGGAAGTATGGGCAAATTCACTTGATTGCTTCTCTGA CTGCTGGCTTAAGCCGTTATCATGATGAATTTGCAGTGGCAGTTGTTGATGAGGTTTTGGAGGAGATTAGGCTTGGGCTGGAACTAAATGACTATGGGAT GCAGCAGAGGCGCATAGCCCACATGCGATTCTTGGGGGAACTATACAATTATGAACACGTGGATTCGTCTGTGATTTTTGAGACCTTGTACTGGATCCTT ATGTTTGGTCATGACACTCCAGAGCAAGACGTGCTAGATCCACCAGAGGATTGTTTCCGCATCAGGATGGTTATCACTCTTCTGGACACTTGCGGACACT ATTTTGACCGAGGCTCTTCTAAGAGGAAACTTAATCGGTTTTTAATGCACTTTCAGAGGTATATTCTCAGCAAAGGTTTGCTACCTCTTGATGTTGAATT TGATTTGCAGGACTTATTTGCTGAATTACGTCCAAATATGATACGGTATTCATCAATTGAAGAAGTCAATGCTGCTCTTATAGAACTCGAGGAGAATGAA CAAACTGTCTCAACTGACAAGTTCAATAGTGAAAAGCACTCTGACACTGACAAACCGTTATGTAGGACTACTTCCAGTACCATCTCTGCCAATGGACAAA GCATTTTGAATGGGAATGAGGAAAATGGATCACATGAGGACATTGGTGGCAGTGACACTGATTCAGGCAGTGGCACCATTGACCAGGATGGACATGATGA AGAAGAGTTAGATGACGAGAATCATGATGGTGGGGTTGACACAGAGGATGAGGATGATGATGGGGATGGACCTGCTTCTGAGGAGGAGGATGAAGTCCAC GTCAGACAAAAGGTTGCAGAGGTGGACCCTCTTGAAGTAGCCAGTTTTGAGCAGGAACTGAGAGCTGTAATGCAGGAGAGCATGGAGCAGCGCAGGCAGG AACTCCGTGGTCGACCGGCATTAAATATGGTGATACCCATGAACTTGTTTGAGGGGTCTGCCAAGGATCATCATGGAAGGGCGGTTGGAGGGGAAAGTGG TGACGAGGACGAGGAGGCTGGAGGAAACAAGGATGTTCAGGTGAAAGTGCTTGTGAAGCGTGGGAATAAGCAACAAACAAAGCAGCTGTACATTCCTAGG GATTGCTCTCTTGTGCAGAGCACAAAACAGAAAGAAGCAGCTGAGTTTGAAGAGAAGCAAGACATCAAGAGGCTGGTGTTGGAGTATAATGATAGAGAGG AGGAGGAGAATAATGGATTGGGGACTCAGACTTTGAATTGGATGACAGGTGGTACCAGCAGAGTTACCGGCCGCGGCAGCACATGGGAAGGAAGTAGTGG AAGAGGCACTGGGTCACGTTACCGGCATCATCATCATTCAGGTAGTGGACTCCATGGCAGAAGAAGGTGA
AA sequence Show only first row Show all	>Potri.008G045400.4 pacid=42808617 polypeptide=Potri.008G045400.4.p locus=Potri.008G045400 ID=Potri.008G045400.4.v4.1 annot-version=v4.1 MDHHEDESRGGSVTPRKQDDEEAVARLEEMKKSIEAKVALRQSNLNPERPDSGFLRTLDSSIKRNTAVIKKLKQINEEQKEGLMEELRNVNLSKFVSEAV TSICDAKLRTSDIQAAVQICSLLHQRYKDFSPSLVQGLLKVFFPGKSGEDLDVDKNSKAMKKRSSLKLLLELYFVGVTEDSSIFINIIKDLTSIENLKDR DTTQTNLTLLASFARQGRVFLGLPLSGQETQEEFLKGLSITTDQKKIFRKAFHTYYDVVAELLKSEHASLRQMEHENAKMLNAKGELSDDNVSSYEKLRK SYDQLYRNVSSLAEALDMQPPVMPEDGHTTRVTSGEDASSPAAGKDTSLLEALWDDEDTRAFYECLPDLRAFVPAVLLGEAEPKANEHSAKTQDQPSELA PESDQGQPTQDMAEVSAESGPLQEGKSTEKGKDKEEKDKEKVKDSEKEKGKEKDAERKGENEKEKLKSLEGTNLDALLQRLPGCVSRDLIDQLTVDFCYL NSKSSRKKLVRALFNVPRTSLELLPYYSRMVATLSTCMKDVSSMLLQLLEEEFNFLINKKDQMNIETKIRNIRFIGELCKFRIAPASTVFSCLKACLDDF THHNIDVACNLLETCGRFLYRTPETTVRMANMLEILMRLKNVKNLDPRHSTLVENAYYLCKPPERSARVSKVRPPLYQYIRKLLFSDLDKSSIEHVLRQL RKLPWSECEAYLLKCFMKVHKGKYGQIHLIASLTAGLSRYHDEFAVAVVDEVLEEIRLGLELNDYGMQQRRIAHMRFLGELYNYEHVDSSVIFETLYWIL MFGHDTPEQDVLDPPEDCFRIRMVITLLDTCGHYFDRGSSKRKLNRFLMHFQRYILSKGLLPLDVEFDLQDLFAELRPNMIRYSSIEEVNAALIELEENE QTVSTDKFNSEKHSDTDKPLCRTTSSTISANGQSILNGNEENGSHEDIGGSDTDSGSGTIDQDGHDEEELDDENHDGGVDTEDEDDDGDGPASEEEDEVH VRQKVAEVDPLEVASFEQELRAVMQESMEQRRQELRGRPALNMVIPMNLFEGSAKDHHGRAVGGESGDEDEEAGGNKDVQVKVLVKRGNKQQTKQLYIPR DCSLVQSTKQKEAAEFEEKQDIKRLVLEYNDREEEENNGLGTQTLNWMTGGTSRVTGRGSTWEGSSGRGTGSRYRHHHHSGSGLHGRRR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G39260			binding;RNA binding (.1)		Potri.008G045400 [exp]	0	1
AT3G12810		CHR13, SRCAP, P...	PHOTOPERIOD-INDEPENDENT EARLY ...		Potri.003G022100 [exp]	3.31	0.8737	CHR928,PIE1.4
AT2G25760			Protein kinase family protein ...		Potri.001G189100 [exp]	3.60	0.8224
AT1G65440		GTB1	global transcription factor gr...		Potri.006G031900 [exp]	4.24	0.8710
AT3G12810		CHR13, SRCAP, P...	PHOTOPERIOD-INDEPENDENT EARLY ...		Potri.001G207700 [exp]	6.00	0.8538
AT2G33540		CPL3, ATCPL3	C-terminal domain phosphatase-...		Potri.001G065600 [exp]	6.00	0.8261
AT3G15470			Transducin/WD40 repeat-like su...		Potri.001G403400 [exp]	6.48	0.8219
AT1G21200	Trihelix		sequence-specific DNA binding ...		Potri.001G019200 [exp]	6.70	0.7645
AT2G41520		TPR15	tetratricopeptide repeat 15, H...		Potri.006G047700 [exp]	6.70	0.8509
AT2G13370		CHR5	chromatin remodeling 5 (.1)		Potri.009G047800 [exp]	7.74	0.8625
AT1G77300		ASHH2, CCR1, SD...	LAZARUS 2, CAROTENOID CHLOROPL...		Potri.002G079100 [exp]	8.48	0.7811

Compare expression of checked genes

Potri.008G045400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.