Plant FIBer expression Database

Potri.008G045467 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.008G045467.1 pacid=42808015 polypeptide=Potri.008G045467.1.p locus=Potri.008G045467 ID=Potri.008G045467.1.v4.1 annot-version=v4.1
ATGTTGTTTCAGTGGCTGGATTGTCAAAGAAGGGAAATGGAAATGGTGGCTGTTTCACATTTCATCTATAAACATGCATTTATAAAATTTGATTTTCTTA
TTTTATGCCAAGTTTTACAGGGTGTTTATGTTTTTGGAGCTAGACTGTACGCGAGTCTGTTTCGTTTCTGGGATAAAACTTCATTCATCTCTGAATTTGC
TAATATTACAAAGAGTTTCTGTTTCTTGTCTTCTTCTTTTTCTGCTTTAATGTCCATGCTGTTAGCAGAAGGTAAAGGCATTGCAGAACTCTTTTCAGTT
AACTAA
AA sequence
>Potri.008G045467.1 pacid=42808015 polypeptide=Potri.008G045467.1.p locus=Potri.008G045467 ID=Potri.008G045467.1.v4.1 annot-version=v4.1
MLFQWLDCQRREMEMVAVSHFIYKHAFIKFDFLILCQVLQGVYVFGARLYASLFRFWDKTSFISEFANITKSFCFLSSSFSALMSMLLAEGKGIAELFSV
N

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.008G045467
[exp]
0 1
AT1G29750 RKF1 receptor-like kinase in flower... Potri.004G063500
[exp]
6.92 0.7396 RKF1.1
AT1G13920 Remorin family protein (.1) Potri.008G093300
[exp]
8.71 0.7112
AT4G16563 Eukaryotic aspartyl protease f... Potri.001G158600
[exp]
10.24 0.7088
AT1G05010 ACO4, EAT1, EFE ethylene forming enzyme, ethyl... Potri.011G020900
[exp]
10.39 0.7001 ACO7,Pt-ACO1.3
AT5G36930 Disease resistance protein (TI... Potri.019G001314
[exp]
10.81 0.7184
AT3G54070 Ankyrin repeat family protein ... Potri.011G015801
[exp]
16.70 0.6873
AT3G18670 Ankyrin repeat family protein ... Potri.006G281600
[exp]
20.66 0.6988
AT4G00770 unknown protein Potri.014G077400
[exp]
20.85 0.6805
AT3G18670 Ankyrin repeat family protein ... Potri.011G016300
[exp]
24.71 0.6825
AT5G13290 SOL2, CRN SUPPRESSOR OF LLP1 2, CORYNE, ... Potri.003G163300
[exp]
30.72 0.6883

Potri.008G045467 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.