Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20280 413 / 3e-144 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G132800 [exp] 457 / 7e-162 AT2G20280 438 / 3e-154 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Potri.016G084100 [exp] 449 / 9e-159 AT2G20280 437 / 1e-153 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015054 [exp] 436 / 2e-153 AT2G20280 466 / 3e-165 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Lus10023164 [exp] 435 / 8e-153 AT2G20280 468 / 1e-165 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF16543 [poplar] [flax] DFRP_C DRG Family Regulatory Proteins, Tma46
Representative CDS sequence Show only first row Show all	>Potri.008G045600.1 pacid=42807871 polypeptide=Potri.008G045600.1.p locus=Potri.008G045600 ID=Potri.008G045600.1.v4.1 annot-version=v4.1 ATGCCTCCAAAGCAATCAAAAGCCGATTTGGCGAAGAAGCAAAAGGTCGTTGAAGATAAAACGTTTGGTCTGAAAAACAAGAGCAAGAGCAAAAGCGTTC AAAAATATGTCCAAAATCTTCAACAAGCCGTCCAGCCCAAACTAGACCCTAGTAAAATCGCCGCCAAGAAAAAGAAAGAGGAAGAGAAAGCAAGAGAAAA GGAGCTGAATGATCTGTTCAAAGTTGCTGTTAGTCAGCCCAAAGTGCCAGTTGGTGTCGATCCCAAGTCTATACTATGTGAATTTTTCAAGGCAGGGCAG TGTGCTAAAGGTTTCAAATGTAAGTTTTCGCATGATTTGAATGTTCAGAGAAAGGGTGAAAAGATTGATATTTACAGCGATAAGCGTGATGAAGACACTA TGGAGGATTGGGATCAAGAGACTCTGGAGAAGGTCGTGGAGTCGAAGAAGAATGAATATAACCAGAATAAACCGACTGATATCGTTTGCAAGTACTTTCT GGAAGTAGTGGAGAAGAAACAATATGGCTGGTTTTGGTCTTGCCCAAATGGTGGTAAAGACTGCCACTACAGACATGCTCTTCCTCCAGGATATGTTTTA AAATCTCAAATGAAGGCACTTCTAGAAGAAGAGGCAGACAAAATTCCTATTGAAGAAGAGATTGAAAATCAGCGTGCAAAATTAACGGCCTCAACTCCAA TGACTCCTGAGCTGTTTACACAATGGAAGACGAAGAAGGCAGAAGAAAGAGAGGCTGGCTTGGCCGCAAAACGAGCAGAAAGAGCTAAGAATGATAGGAT GAGTGGCCGGGAGCTGTTCCTCTCTGATTCAAGTGTATTTGTGGATGATGCTGAGGCATATGAAAATTACCAGAGGGGAGAAGAACTTGTGGTCACTGAA GAGAAGTCCAAGGTCAATTCAGCAGCAGTGCCAAGCACATCGACAGGGGCAGTTGCTGATACAGAAGAGGACCTACCTGACGAGGATGAAGATGATGACG AGCTGGATATGGATGAGCTAAATGAGCTTGAAGCTAGCTTGTCAAAAACATCTGTTCAAACCCATGGGCCAGGTATTAAGGCGTCATCTTGA
AA sequence Show only first row Show all	>Potri.008G045600.1 pacid=42807871 polypeptide=Potri.008G045600.1.p locus=Potri.008G045600 ID=Potri.008G045600.1.v4.1 annot-version=v4.1 MPPKQSKADLAKKQKVVEDKTFGLKNKSKSKSVQKYVQNLQQAVQPKLDPSKIAAKKKKEEEKAREKELNDLFKVAVSQPKVPVGVDPKSILCEFFKAGQ CAKGFKCKFSHDLNVQRKGEKIDIYSDKRDEDTMEDWDQETLEKVVESKKNEYNQNKPTDIVCKYFLEVVEKKQYGWFWSCPNGGKDCHYRHALPPGYVL KSQMKALLEEEADKIPIEEEIENQRAKLTASTPMTPELFTQWKTKKAEEREAGLAAKRAERAKNDRMSGRELFLSDSSVFVDDAEAYENYQRGEELVVTE EKSKVNSAAVPSTSTGAVADTEEDLPDEDEDDDELDMDELNELEASLSKTSVQTHGPGIKASS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G20280	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Potri.008G045600 [exp]	0	1
AT5G62440			Protein of unknown function (D...		Potri.005G033100 [exp]	4.58	0.7320
AT2G44820			unknown protein		Potri.013G075500 [exp]	19.07	0.6617
AT2G45860			unknown protein		Potri.014G082300 [exp]	19.74	0.7072
AT3G24570			Peroxisomal membrane 22 kDa (M...		Potri.018G037100 [exp]	24.69	0.6690
AT3G04830			Protein prenylyltransferase su...		Potri.013G038700 [exp]	25.41	0.6547
AT5G57280		RID2	root initiation defective 2, S...		Potri.018G049800 [exp]	28.42	0.7048
AT4G22320			unknown protein		Potri.004G001500 [exp]	34.49	0.5724
AT3G01435			Expressed protein (.1)		Potri.004G001600 [exp]	40.24	0.6713
AT2G21060		ATCSP4, ATGRP2B	COLD SHOCK DOMAIN PROTEIN 4, g...		Potri.009G132000 [exp]	40.69	0.6655
AT4G09570		CPK4, ATCPK4	calcium-dependent protein kina...		Potri.019G083200 [exp]	41.85	0.6720

Compare expression of checked genes

Potri.008G045600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.