Plant FIBer expression Database

Potri.008G045700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G45740 487 / 5e-172 hydrolase family protein / HAD-superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G216000
[exp]
651 / 0 AT3G45740 466 / 1e-164 hydrolase family protein / HAD-superfamily protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10023480
[exp]
520 / 0 AT3G45740 448 / 2e-157 hydrolase family protein / HAD-superfamily protein (.1)
Lus10008416
[exp]
454 / 4e-158 AT3G45740 481 / 2e-169 hydrolase family protein / HAD-superfamily protein (.1)
Lus10001969
[exp]
270 / 2e-87 AT3G45740 298 / 9e-100 hydrolase family protein / HAD-superfamily protein (.1)
Lus10040363
[exp]
154 / 4e-45 AT3G45740 129 / 6e-37 hydrolase family protein / HAD-superfamily protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0137 HAD PF13242 Hydrolase_like HAD-hyrolase-like
CL0137 HAD PF13344 Hydrolase_6 Haloacid dehalogenase-like hydrolase
Representative CDS sequence
>Potri.008G045700.6 pacid=42806619 polypeptide=Potri.008G045700.6.p locus=Potri.008G045700 ID=Potri.008G045700.6.v4.1 annot-version=v4.1
ATGGAAAAAAAAAAAACTCAGGCCTTTTTAAGTTTTCTTCTCAACTCAACAAACGATCATCGTAAACGACTGTCGTCGAGGACTTGTGGCGCCCGTGCTC
TACACAAAACTACGACGCGAGGCTCCTCCTCCTTACAAAAGCGAACAAGTTTCTGCACCAGAAGAAAGAGAGGGAGAGAGAAAGAGATGAGATTCCAGAG
ATCGCTGGCGGTTGTGTTTCCCCGGATAAGAAACAAATTTCAATCTCAAGCTTCGCGTTACTTTTCCTCGCAGCTTGAATCAGAACAACGGTCCTCTTTT
GGAATCGCGTTTGATATCGATGGGGTTATTCTTCGTGGCCGAGATCCCATTGGTGGCTCTCCTCAAGCTATGCGTAGATTATACGGAGATTCTGGAAACT
TGAATGTTCCTTTTTTGTTCTTGACAAACGGAGGCGGCGTTCCTGAATCGAAAAGAGCTAATGAGTTAAGTGAACAGCTTGGAGTAAAGATTTTACCCTC
TCAGGTTTTACAGGGTCATTCACCATTTAAAAGTTTGTCGGAAAGATATGAGAATCAATTAATTATTGCTGCTGGAAAAGGAGAACCTGCTGTAGTAATG
TCTGAGTATGGTTTCAAAAAAGTTGTCTCCTTAGATGAGTATGCATCTCTCTTTGAGAACATTGATCCTCTGTCTGAATACAAGAAGTGGACAGCTAACC
AAGTGTTGGATAGGAGTGTTCACCCCATGAATACAGTGCCAAGATATGATGTTTCTTCTGAAGCAGTTAAGGCGGTATTTGTTGTTAGTGACCCTGTAGA
CTGGGGCAGGGACATCCAGGTTCTCTGTGATGTTTTAAGATGCGGGGGTCTTCCTGGACAGGAGAATGGTCATCAGCCTCCTCTATATTTTGCTTCTGAT
GATCTTGAATATAAGGCTGCATTTCCTTCCAATCGACTTGGAATGGGGGCTTTCAGAATTGCCCTGGAAAGTGTTTTCAATAGAGTTCACCATAATCCTC
TAGAGCATGTTTCCTTTGGGAAGCCAAATCCAGTTGTATTTAAGAATGCTGAAGCTATGTTGAGGCAGCTTCAACCATCTTATCATAGCGATAGTTCTAA
GGAATCTGGAGATTCGGGTTTGCAATCATTCAAAACCCTTTATATGATTGGTGACAACCCTTCAGTTGACATTAAAGGTGCACGGCAGGCAGGACATCCC
TGGTTTTCTATCCTGACAAGGACAGGTGTTTTCCAGGGAAAGCATAACCATGCAGAGTTTCCTGCAGATCTGGTTGTTGATACTGTGGAAGAGGCAGTGG
ACTATATTCTTGGAAGGGAGTGTGTTTCATAG
AA sequence
>Potri.008G045700.6 pacid=42806619 polypeptide=Potri.008G045700.6.p locus=Potri.008G045700 ID=Potri.008G045700.6.v4.1 annot-version=v4.1
MEKKKTQAFLSFLLNSTNDHRKRLSSRTCGARALHKTTTRGSSSLQKRTSFCTRRKRGREKEMRFQRSLAVVFPRIRNKFQSQASRYFSSQLESEQRSSF
GIAFDIDGVILRGRDPIGGSPQAMRRLYGDSGNLNVPFLFLTNGGGVPESKRANELSEQLGVKILPSQVLQGHSPFKSLSERYENQLIIAAGKGEPAVVM
SEYGFKKVVSLDEYASLFENIDPLSEYKKWTANQVLDRSVHPMNTVPRYDVSSEAVKAVFVVSDPVDWGRDIQVLCDVLRCGGLPGQENGHQPPLYFASD
DLEYKAAFPSNRLGMGAFRIALESVFNRVHHNPLEHVSFGKPNPVVFKNAEAMLRQLQPSYHSDSSKESGDSGLQSFKTLYMIGDNPSVDIKGARQAGHP
WFSILTRTGVFQGKHNHAEFPADLVVDTVEEAVDYILGRECVS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G45740 hydrolase family protein / HAD... Potri.008G045700
[exp]
0 1
AT1G49180 protein kinase family protein ... Potri.019G011300
[exp]
6.48 0.7768
AT3G20020 ATPRMT6 ARABIDOPSIS THALIANA PROTEIN A... Potri.014G004000
[exp]
9.38 0.7958
AT3G13170 ATSPO11-1 Spo11/DNA topoisomerase VI, su... Potri.001G366700
[exp]
11.61 0.7289
AT4G37740 GRF ATGRF2 growth-regulating factor 2 (.1... Potri.003G100800
[exp]
11.83 0.7426
AT4G32190 Myosin heavy chain-related pro... Potri.006G255800
[exp]
12.12 0.7409
AT3G55920 Cyclophilin-like peptidyl-prol... Potri.010G189000
[exp]
12.44 0.7853
AT3G18210 2-oxoglutarate (2OG) and Fe(II... Potri.012G051200
[exp]
15.09 0.7804
AT3G28370 unknown protein Potri.017G074100
[exp]
15.62 0.7894
AT5G41480 EMB9, ATDFA, GL... GLOBULAR ARREST1, EMBRYO DEFEC... Potri.015G022400
[exp]
16.61 0.7094
Potri.015G116300
[exp]
16.73 0.7510

Potri.008G045700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.