Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13510 273 / 2e-93 EMB3136 EMBRYO DEFECTIVE 3136, Ribosomal protein L10 family protein (.1) AT3G12370 184 / 4e-59 Ribosomal protein L10 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G215900 [exp] 394 / 3e-141 AT5G13510 300 / 4e-104 EMBRYO DEFECTIVE 3136, Ribosomal protein L10 family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001982 [exp] 306 / 1e-106 AT5G13510 307 / 4e-107 EMBRYO DEFECTIVE 3136, Ribosomal protein L10 family protein (.1) Lus10030298 [exp] 183 / 1e-59 AT5G13510 184 / 3e-60 EMBRYO DEFECTIVE 3136, Ribosomal protein L10 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00466 [poplar] [flax] Ribosomal_L10 Ribosomal protein L10
Representative CDS sequence Show only first row Show all	>Potri.008G045800.1 pacid=42807290 polypeptide=Potri.008G045800.1.p locus=Potri.008G045800 ID=Potri.008G045800.1.v4.1 annot-version=v4.1 ATGGAAACCACCAGTCTCCTCTCCTTTCCCTCCTCCAAACCTCCTCCTACCCGAACCCATTTTCGGCCCGCAAACCCATTTTCCTTTTCCTTCCCCACAA CCCACAAAACCTCCATTTCACACAGACCCATTAACATCAAATCCGCAATTTCCCGCACAAAAAAGGAAGAAACAGTGGAAACAGTCAAAACCCAGCTCGA AAATTGCTACCTCTTAGCAGCTATAAAATACACAGGCTTCACAGTCAAACAATTTCAAGACTTGAGAAGATCATTACCTGAATCATCAAAAATCATTGTT GCTAAAAACACTTTGGTGTATAAGGCCATTGAAAATACGCCATGGGAAGCTTTAAAACCTTGTATGACAGGAATGAATGCTTGGCTTTTTGTGCATAGTG AGGAAATTCCTGAAGCTTTAAAGCCTTATAGGGATTTTCAAAAAGAAAAGAAGTTAGAGAATGATTTTACCGGGGCTGTTTTTGAAGGAAAGTTTTATGG GCCTGGTGATTTTAAGCAACTTGAAACAATGCCGTCCAGAGCTGAGATTTATGCTAAGATTTTGGGGGCTTTACAGGGTCCTGCTATTGGATTGGTGGGT ACTTTACAGGCGCCGGCGAGGGATGTTGTTATGGTTTTGAAGGCTTATGTGCAGAAGTTGGAGGAGGAGAGTAGTGGGCAATAG
AA sequence Show only first row Show all	>Potri.008G045800.1 pacid=42807290 polypeptide=Potri.008G045800.1.p locus=Potri.008G045800 ID=Potri.008G045800.1.v4.1 annot-version=v4.1 METTSLLSFPSSKPPPTRTHFRPANPFSFSFPTTHKTSISHRPINIKSAISRTKKEETVETVKTQLENCYLLAAIKYTGFTVKQFQDLRRSLPESSKIIV AKNTLVYKAIENTPWEALKPCMTGMNAWLFVHSEEIPEALKPYRDFQKEKKLENDFTGAVFEGKFYGPGDFKQLETMPSRAEIYAKILGALQGPAIGLVG TLQAPARDVVMVLKAYVQKLEEESSGQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G13510		EMB3136	EMBRYO DEFECTIVE 3136, Ribosom...		Potri.008G045800 [exp]	0	1
AT1G74970		TWN3, RPS9	ribosomal protein S9 (.1)		Potri.014G039600 [exp]	2.23	0.9874	RPS9.1
AT1G79850		PDE347, CS17, P...	PLASTID RIBOSOMAL SMALL SUBUNI...		Potri.001G184000 [exp]	3.46	0.9868
AT2G17972			unknown protein		Potri.005G115000 [exp]	4.00	0.9841
AT3G52150			RNA-binding (RRM/RBD/RNP motif...		Potri.009G065900 [exp]	4.58	0.9867
AT5G20935			unknown protein		Potri.009G155300 [exp]	5.29	0.9863
AT1G74880		NdhO, NDH-O	NADH dehydrogenase-like comple...		Potri.007G106500 [exp]	5.47	0.9859
AT2G46735			unknown protein		Potri.002G178100 [exp]	6.32	0.9759
AT5G13510		EMB3136	EMBRYO DEFECTIVE 3136, Ribosom...		Potri.010G215900 [exp]	6.32	0.9861
AT3G26570		ORF02, PHT2;1	phosphate transporter 2;1 (.1....		Potri.008G186601 [exp]	6.70	0.9775
AT4G20360		AtRab8D, AtRABE...	RAB GTPase homolog E1B (.1)		Potri.003G121600 [exp]	8.77	0.9843

Compare expression of checked genes

Potri.008G045800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.