Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-TON1.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55005 370 / 1e-130 TON1B tonneau 1b (TON1b) (.1) AT3G55000 359 / 3e-126 TON1A TONNEAU 1A, TONNEAU 1, tonneau family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G215500 [exp] 485 / 3e-176 AT3G55005 357 / 2e-125 tonneau 1b (TON1b) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030297 [exp] 456 / 2e-164 AT3G55005 359 / 2e-126 tonneau 1b (TON1b) (.1) Lus10001983 [exp] 441 / 9e-159 AT3G55000 359 / 3e-126 TONNEAU 1A, TONNEAU 1, tonneau family protein (.1) Lus10023478 [exp] 387 / 1e-137 AT3G55005 340 / 4e-119 tonneau 1b (TON1b) (.1) Lus10040360 [exp] 369 / 6e-130 AT3G55005 327 / 1e-113 tonneau 1b (TON1b) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0561 [poplar] [flax] LisH PF16045 [poplar] [flax] LisH_2 LisH
Representative CDS sequence Show only first row Show all	>Potri.008G046000.1 pacid=42808057 polypeptide=Potri.008G046000.1.p locus=Potri.008G046000 ID=Potri.008G046000.1.v4.1 annot-version=v4.1 ATGGATGATTACACGAGAGAAATGATGGACCTGAAAACACTCGTCACTCGAACCCTAGAGAAAAAGGGCGTCCTTGCTAAGATCCGGGCTGAACTGAGGG CAAGTGTTTTTGAGGCAATTGAAGAGGAGGATAGGGTAATTGACAAGGATGAAGGCCTACCCCCTGCATTATTAGGAAGCTGCAATGATCGTGCTAAACA ACTTCACGCTTCTCCATCAGGGAGGCTGCTAACTGCACTAATTTGTGAATACTTAGACTGGGGGCAGCTAAATCACACGCTAAAAGTCTATTTACCAGAG TGCAATTTGCAAAAGGATTCTTGGAAAGCTGAGTTGAAAGAATTCAGTAGCAAGAATGGATATGACCTGAACAGGAACGGAGATAGTGCTCCTTTGCTTT TGGATGTTCTTGAAGGATTCTTGAAGTTTGAGAATTTATCCCAAGGAAGGGGTACTGGAAGGAGAATGTCAGAAACCGAGTCCTTATCCAATGTAGAGTC TAGGAATATGCGAAGACCCTCATCATCATCTGTTGCTGGTGGCTTACCTCCATTAATAAGGCCAGCTTCTTCCCAGGCATCTGATAGGAGAGCAGGGTCT TCCATGTCTGGTTACAGGAAAGATGATAACAGTTGGCGATATGATGGTGATGAACTACCTGAGGATGTGATTCGAGCTTCTACTGCCCTTGAAAACCTTC AGCTGGACAGGAAAGCTAGGAATCTGACTACATCTTGGAGGCATGCTGGGGATGGCATCAGTGATGACGGGGGGAGGGCTGACCACATTTAG
AA sequence Show only first row Show all	>Potri.008G046000.1 pacid=42808057 polypeptide=Potri.008G046000.1.p locus=Potri.008G046000 ID=Potri.008G046000.1.v4.1 annot-version=v4.1 MDDYTREMMDLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRVIDKDEGLPPALLGSCNDRAKQLHASPSGRLLTALICEYLDWGQLNHTLKVYLPE CNLQKDSWKAELKEFSSKNGYDLNRNGDSAPLLLDVLEGFLKFENLSQGRGTGRRMSETESLSNVESRNMRRPSSSSVAGGLPPLIRPASSQASDRRAGS SMSGYRKDDNSWRYDGDELPEDVIRASTALENLQLDRKARNLTTSWRHAGDGISDDGGRADHI

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G55005		TON1B	tonneau 1b (TON1b) (.1)		Potri.008G046000 [exp]	0	1	Pt-TON1.2
AT1G26355		SP1L1	SPIRAL1-like1 (.1)		Potri.008G097000 [exp]	5.00	0.9017
AT2G03510			SPFH/Band 7/PHB domain-contain...		Potri.010G158700 [exp]	5.47	0.8695
AT3G43810		CAM7	calmodulin 7 (.1)		Potri.009G021500 [exp]	11.66	0.8840	Pt-ACCAL.1
AT5G48485		DIR1	DEFECTIVE IN INDUCED RESISTANC...		Potri.014G149900 [exp]	12.00	0.8264
AT1G10200	LIM	WLIM1, SF3	WLIM1, GATA type zinc finger t...		Potri.002G118000 [exp]	19.05	0.8747
AT1G12310			Calcium-binding EF-hand family...		Potri.001G117900 [exp]	20.85	0.8719
AT4G15930			Dynein light chain type 1 fami...		Potri.008G219900 [exp]	26.38	0.8655
AT1G78870		UBC35 ,UBC13A	UBIQUITIN CONJUGATING ENZYME 1...		Potri.011G111400 [exp]	35.49	0.8648
AT5G39510		ZIG1, SGR4, ATV...	SHOOT GRAVITROPSIM 4, VESICLE ...		Potri.004G115700 [exp]	41.66	0.8582
AT4G29340		PRF4	profilin 4 (.1)		Potri.006G235200 [exp]	41.83	0.8690	Pt-PRO1.4

Compare expression of checked genes

Potri.008G046000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.