Plant FIBer expression Database

Potri.008G046400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G10090 320 / 5e-111 ELP6 elongator protein 6 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10023475
[exp]
343 / 8e-120 AT4G10090 300 / 1e-102 elongator protein 6 (.1)
Lus10040357
[exp]
306 / 1e-105 AT4G10090 261 / 6e-88 elongator protein 6 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0023 P-loop_NTPase PF09807 ELP6 Elongation complex protein 6
Representative CDS sequence
>Potri.008G046400.1 pacid=42808474 polypeptide=Potri.008G046400.1.p locus=Potri.008G046400 ID=Potri.008G046400.1.v4.1 annot-version=v4.1
ATGGAGAATCGATCTCTAAATCTCCTAGACGAAGCCCTGGGCCTCGACTACCAGACTGACCCATGGCCTCTTCGCGGAAAAGTGGTTTTAATCGAGGACT
GCGTAGAGACCAGCGGCTGCTTCGTGCTTCATCAACTCCTAAAGCGCACGCTCTCTTCCCAATCTCCAAACAATACAGTCATCTTCCTCGCTTTCTCACA
CCCCTTATCCCACTACGATCGCATTCTACGCAAACTGGGTTGCAATTTGGTAGCCCAAAGGGAAAATGGCAGATTCTTTTTCTTTGATATGCTTAAGCTA
CTGTGTCCAGATGAGAAGGAAGGGAAAACTGGCAAAGGTGGATTTACTGCATTATACTGGAAAATACAGAATACAATATGTGCCTTGCCTGAAAACAACA
AGAACCATGCTACCATAATGATAGATGACATGTCTCTTATGGAGGTGGCTGCCCATGGCTCTTCAGATCATGTCCTAAACTTCATGCATTATTGTCACAC
CTTAACGTCAGAACTTGGTTGCTCCTTAATAACACTTAATCATGAGGATATATATACAAGCATGGAGAGGCCTACATTTATGTTACAGACTAAATACCTT
GTGGATGTTTTGATAAAGGCAGAACCTTTAGCCACTGGGTTGGCAGCTGATGTACACGGGCAGTTGACAGTTTTGAACAGGGATTTTTGCAATGTGAAGG
GGAGCTCAAAGAACAAGATAAGCAATTTCCACTTCAAGGTCAAGGAAAATAGCGTTGAATACTTCTATCCTGGCACTCGGACTTGA
AA sequence
>Potri.008G046400.1 pacid=42808474 polypeptide=Potri.008G046400.1.p locus=Potri.008G046400 ID=Potri.008G046400.1.v4.1 annot-version=v4.1
MENRSLNLLDEALGLDYQTDPWPLRGKVVLIEDCVETSGCFVLHQLLKRTLSSQSPNNTVIFLAFSHPLSHYDRILRKLGCNLVAQRENGRFFFFDMLKL
LCPDEKEGKTGKGGFTALYWKIQNTICALPENNKNHATIMIDDMSLMEVAAHGSSDHVLNFMHYCHTLTSELGCSLITLNHEDIYTSMERPTFMLQTKYL
VDVLIKAEPLATGLAADVHGQLTVLNRDFCNVKGSSKNKISNFHFKVKENSVEYFYPGTRT

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G10090 ELP6 elongator protein 6 (.1) Potri.008G046400
[exp]
0 1
AT1G27650 C3HZnF ATU2AF35A U2 snRNP auxiliary factor smal... Potri.005G258000
[exp]
1.41 0.7517
AT4G22350 Ubiquitin C-terminal hydrolase... Potri.016G014000
[exp]
2.00 0.7281
AT3G02490 Pentatricopeptide repeat (PPR)... Potri.004G108000
[exp]
3.87 0.7664
AT1G19860 C3HZnF Zinc finger C-x8-C-x5-C-x3-H t... Potri.005G236300
[exp]
4.00 0.7047
AT4G18905 Transducin/WD40 repeat-like su... Potri.007G019601
[exp]
8.77 0.7085
AT2G28480 RNA-binding CRS1 / YhbY (CRM) ... Potri.007G129600
[exp]
11.48 0.6576
AT4G01560 MEE49 maternal effect embryo arrest ... Potri.014G108400
[exp]
13.78 0.7139
AT1G33520 MOS2 modifier of snc1, 2, D111/G-pa... Potri.003G104200
[exp]
14.69 0.7338
AT3G58630 Trihelix sequence-specific DNA binding ... Potri.003G118600
[exp]
14.69 0.6535
AT2G33835 C3HZnF FES1 FRIGIDA-ESSENTIAL 1, Zinc fing... Potri.011G056600
[exp]
17.49 0.7087

Potri.008G046400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.