Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55020 966 / 0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT2G39280 870 / 0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) AT2G37290 693 / 0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) AT3G07890 168 / 2e-45 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) AT5G15930 112 / 1e-26 PAM1 plant adhesion molecule 1 (.1) AT3G02460 102 / 3e-23 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) AT5G24390 52 / 2e-06 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT4G13730 49 / 1e-05 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3) AT5G52580 46 / 9e-05 RabGAP/TBC domain-containing protein (.1.2) AT5G53570 46 / 9e-05 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G215000 [exp] 1363 / 0 AT3G55020 1039 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.006G133400 [exp] 749 / 0 AT2G37290 875 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Potri.014G163400 [exp] 168 / 2e-45 AT3G07890 719 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Potri.002G218100 [exp] 166 / 1e-44 AT3G07890 696 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Potri.004G106700 [exp] 106 / 2e-24 AT5G15930 584 / 0.0 plant adhesion molecule 1 (.1) Potri.017G109000 [exp] 104 / 7e-24 AT5G15930 575 / 0.0 plant adhesion molecule 1 (.1) Potri.007G134200 [exp] 58 / 2e-08 AT2G30710 692 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.001G316700 [exp] 54 / 3e-07 AT4G13730 586 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3) Potri.017G057100 [exp] 50 / 6e-06 AT4G13730 602 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041425 [exp] 960 / 0 AT3G55020 919 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10040349 [exp] 948 / 0 AT3G55020 895 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10023472 [exp] 905 / 0 AT3G55020 865 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10014020 [exp] 692 / 0 AT2G37290 801 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Lus10036500 [exp] 596 / 0 AT3G55020 608 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10012363 [exp] 171 / 1e-46 AT3G07890 698 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Lus10006410 [exp] 171 / 2e-46 AT3G07890 701 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Lus10036501 [exp] 161 / 4e-44 AT3G55020 141 / 2e-37 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10003047 [exp] 110 / 1e-25 AT3G02460 577 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Lus10034099 [exp] 109 / 2e-25 AT3G02460 573 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00566 [poplar] [flax] RabGAP-TBC Rab-GTPase-TBC domain
Representative CDS sequence Show only first row Show all	>Potri.008G046600.1 pacid=42807598 polypeptide=Potri.008G046600.1.p locus=Potri.008G046600 ID=Potri.008G046600.1.v4.1 annot-version=v4.1 ATGAAGTCCCAAACGAAATCTATCAACCCTCTCACCGCCTTTGAACACAAGAGGGATGCGTATGGATTTGCTGTGAGACCGCAGCATTTACAAAGATACA GAGAATATGCTAATATCTACCAGGAGGAAGAAGAGGAAAGATCGGATAGATGGAAGACCTTCTTGGAACAGCAAGCAGATTCTTCTCAATTGCCGATAAA TGGCACATCTTCTGAGAAATATAACAAGGAGTTGCATGCTGAAGCAACAGAGCAAGAGATAAATAATGGCTCGGAGAAGGGCGTTGATATAAGTGGTGAG GAACCTAGTTCTGATGTTTTACTGGAAAACGTTACAGAGGAGAAACAGTCTGCAACCAGTAAAAAGACTCATGGGATCCAAATATGGACTGAGATCAGGC CATCCCTCCGTGTCATTGAGGATATGATGAGTCTTCGCATCATGAGGAAAGGAAACCAATCAAAAGACCAGCAAGAGACTAAAAAAGAAAGGATGGTACC TTCTTTTGAAGATGCCAAATCAGCAAAAGGAGCATCTGAAGAGGATTCTGAAGACGAGTTTTACGACGTGGAAAGATCAGATCCAAATCAAGACACCTCT TCCAGTGACAGTGCTAGTGCCCCTGCCACAGGTGCTCCTGCTGATGCGCTGCCTCCAGAATCTTCATTTCCTTGGAAAGAAGAGCTGGAGGTCCTTGTAC GCGGGGGAGTCCCAATGGCACTCAGAGGAGAGCTCTGGCAAGCATTTGTGGGTGCAAGGACACGCAGAGTGGAGAAGTATTACCAGGATCTGCTTGCTTC AGAAACTAATTCTGGAAATCATGTAGACCAACAATCAGACAGTGATACCAAAGGTTCAACTGCAGACACTGTTTGTGTACCAGAGAAATGGAAAGGCCAG ATCGAGAAGGACTTGCCAAGAACTTTTCCAGGTCATCCTGCTTTGGACAATGATGGTAGAGATGCTCTGAGGCGATTGCTGACAGCATATGCTCGACATA ACCCTGCCGTTGGCTACTGTCAGGCCATGAATTTTTTTGCTGCCTTGTTGCTACTTCTGATGCCTGAAGAAAATGCCTTCTGGACATTGATGGGTATTAT CGATGACTATTTTGATGGTTATTACTCAGAGGAAATGATAGAGTCACAGGTTGACCAACTTGTCTTTGAGGAGCTGGTGCGCGAAAGGTTTCCTAAATTG GTCAATCATCTTGATTACCAGGGAGTGCAGGTTGCTTGGGTTACTGGGCCATGGTTCCTTTCCATATTCATGAACATGCTTCCTTGGGAAAGTGTTCTCC GAGTTTGGGATGTCCTCCTTTACGAAGGAAACCGTGTCATGTTATTTAGGACAGCACTTGCTTTGATGGAGTTATATGGCCCTGCATTAGTTACCACTAA GGATGCTGGAGATGCAGTTACTTTGCTACAGTCACTGGCAGGCTCAACGTTTGATAGCAGTCAACTTGTCTTAACAGCCTGCATGGGTTACCAAAATGTA AATGAAACCAGATTACAAGAGCTGAGAAATAAGCATCGACAGGCTGTTATAACTATGGTTGAGGAAAGAACAAAGGGGCTTCAAGCTTTGAGGGATTCTC AGGGTCTGGCAACTAAGCTATATAATTTCAAGCATGATCGCAAGTCAATACTGATGGAAACAACTAAAAAGACTAGTGGTGAATTGTCTCGTTCAGAGTC TGGATCCACCAATGCAGATGAAGTTCTTATTAGCCTGACAGGGGATGCTGAAATAGATAGTGTTCCAGATCAGGTAGTGTGGTTGAAGGTTGAACTGTGC AAGTTGCTAGAGGAGAAAAGATCTACCATGCTCAGAGCTGAGGAGTTGGAGACAGCTTTGATGGAGATGGTCAAGCAAGATAATCGGCGGCAATTGAGTG CTAGGGTCGAACAGTTAGAGCAAGAGGTTTCTGAGCTGCGGAGGGCTCTTGCTGATAAGCAGGAACAAGAAAATGCCATGCTTCAGGTCTTAATGCGGGT GGAACAAGATCAAAAGGTAACTGAAGATGCTCGCATATATGCTGAGCAAGATGCGGCAGCACAGAGATATGCAGCTCAAGTGCTTCAGGAAAAATATGAA CAGGCCATTGCATCACTTGCTGAAATGGAGAAACGAGTGGTTATGGCAGAGTCAATGTTGGAGGCCACTTTGCAGTATCAGTCTGGTCAACTTAAAGCAC AACCTTCTCCTCGATCTTCACATCCAGATTCACAAACACGTGCCAATCAAGAGCCTGAACAGGAAATACCTGCAAGAAAGATTGGTTTACTAGCCCGACC ATTTGGACTTGGATGGCGTGACCGAAACAAGGGGAAACCCGCCACTGTTGAGGAGGCAAGTGATGACAAGTCTACCAATGAGGGGCAGAATCCTGAGCAG GAGACTAATGGCATTTCAGCACACGACAAGTAA
AA sequence Show only first row Show all	>Potri.008G046600.1 pacid=42807598 polypeptide=Potri.008G046600.1.p locus=Potri.008G046600 ID=Potri.008G046600.1.v4.1 annot-version=v4.1 MKSQTKSINPLTAFEHKRDAYGFAVRPQHLQRYREYANIYQEEEEERSDRWKTFLEQQADSSQLPINGTSSEKYNKELHAEATEQEINNGSEKGVDISGE EPSSDVLLENVTEEKQSATSKKTHGIQIWTEIRPSLRVIEDMMSLRIMRKGNQSKDQQETKKERMVPSFEDAKSAKGASEEDSEDEFYDVERSDPNQDTS SSDSASAPATGAPADALPPESSFPWKEELEVLVRGGVPMALRGELWQAFVGARTRRVEKYYQDLLASETNSGNHVDQQSDSDTKGSTADTVCVPEKWKGQ IEKDLPRTFPGHPALDNDGRDALRRLLTAYARHNPAVGYCQAMNFFAALLLLLMPEENAFWTLMGIIDDYFDGYYSEEMIESQVDQLVFEELVRERFPKL VNHLDYQGVQVAWVTGPWFLSIFMNMLPWESVLRVWDVLLYEGNRVMLFRTALALMELYGPALVTTKDAGDAVTLLQSLAGSTFDSSQLVLTACMGYQNV NETRLQELRNKHRQAVITMVEERTKGLQALRDSQGLATKLYNFKHDRKSILMETTKKTSGELSRSESGSTNADEVLISLTGDAEIDSVPDQVVWLKVELC KLLEEKRSTMLRAEELETALMEMVKQDNRRQLSARVEQLEQEVSELRRALADKQEQENAMLQVLMRVEQDQKVTEDARIYAEQDAAAQRYAAQVLQEKYE QAIASLAEMEKRVVMAESMLEATLQYQSGQLKAQPSPRSSHPDSQTRANQEPEQEIPARKIGLLARPFGLGWRDRNKGKPATVEEASDDKSTNEGQNPEQ ETNGISAHDK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G55020			Ypt/Rab-GAP domain of gyp1p su...		Potri.008G046600 [exp]	0	1
AT5G18610			Protein kinase superfamily pro...		Potri.008G046500 [exp]	2.00	0.8075	Pt-PNPK2.2
AT3G07330		ATCSLC6, ATCSLC...	CELLULOSE-SYNTHASE LIKE C6, Ce...		Potri.002G248400 [exp]	5.19	0.7296	ATCSLC06.4
AT1G77620			P-loop containing nucleoside t...		Potri.005G177000 [exp]	5.47	0.7967
AT4G32010	B3	HSL1, HSI2-L1, ...	VP1/ABI3-LIKE 2, HSI2-like 1 (...		Potri.004G035300 [exp]	12.00	0.7511
AT3G12380		ATARP5	actin-related protein 5 (.1.2)		Potri.010G202000 [exp]	14.96	0.6976	ARP909
AT1G12460			Leucine-rich repeat protein ki...		Potri.003G117500 [exp]	15.49	0.7279
AT2G25220			Protein kinase superfamily pro...		Potri.001G048500 [exp]	24.97	0.7526
AT5G64740		PRC1, IXR2, E11...	PROCUSTE 1, ISOXABEN RESISTANT...		Potri.013G019800 [exp]	26.92	0.6947
AT3G20020		ATPRMT6	ARABIDOPSIS THALIANA PROTEIN A...		Potri.007G000300 [exp]	27.49	0.7483
AT1G53860			Remorin family protein (.1)		Potri.001G163000 [exp]	35.63	0.7493

Compare expression of checked genes

Potri.008G046600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.