Plant FIBer expression Database

Potri.008G046700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G55030 315 / 6e-108 PGPS2 phosphatidylglycerolphosphate synthase 2 (.1)
AT2G39290 317 / 2e-107 PGP1, PGS1, PGPS1 phosphatidylglycerolphosphate synthase 1 (.1)
AT4G04870 60 / 8e-10 CLS cardiolipin synthase (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G214900
[exp]
394 / 5e-139 AT3G55030 312 / 1e-108 phosphatidylglycerolphosphate synthase 2 (.1)
Potri.004G018300
[exp]
59 / 2e-09 AT4G04870 351 / 1e-120 cardiolipin synthase (.1)
Potri.009G135500
[exp]
42 / 0.0004 AT1G68000 340 / 6e-120 phosphatidylinositol synthase 1 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10023471
[exp]
340 / 1e-115 AT2G39290 332 / 2e-113 phosphatidylglycerolphosphate synthase 1 (.1)
Lus10040348
[exp]
310 / 3e-103 AT2G39290 301 / 3e-100 phosphatidylglycerolphosphate synthase 1 (.1)
Lus10030301
[exp]
303 / 6e-103 AT2G39290 311 / 2e-107 phosphatidylglycerolphosphate synthase 1 (.1)
Lus10001977
[exp]
302 / 1e-102 AT2G39290 310 / 1e-106 phosphatidylglycerolphosphate synthase 1 (.1)
Lus10007662
[exp]
56 / 1e-08 AT4G04870 304 / 1e-103 cardiolipin synthase (.1)
Lus10018349
[exp]
56 / 3e-08 AT1G61850 1781 / 0.0 phospholipases;galactolipases (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF01066 CDP-OH_P_transf CDP-alcohol phosphatidyltransferase
Representative CDS sequence
>Potri.008G046700.2 pacid=42807905 polypeptide=Potri.008G046700.2.p locus=Potri.008G046700 ID=Potri.008G046700.2.v4.1 annot-version=v4.1
ATGCCAACCCTTAAACTAAGCATGGCAGTTTCACTCCTTCACCACAAAAAATTAGCCCACACAATCACCACCACCACCTCCACCGCCAACCCCACCCCAT
TTCTCACTCCTCACTCTCTCTCTACACCCCTAAACAGCGATAAAAGTTTGCGCGCGTTAACACCCTGCGCACACCTCCCCTCAAATAAGAATAATAAAAA
TACCCCCTATTATTACCATTATAACATTACTAGTTATAATAATAACAAAAGTAGCAAAAACTTTTTAGGAGCTACGTTTCGTGGCTCTCTTTTATTTCCC
TCTCGCAAATCTAGTTCATCCACCCGCTTCTCCAGATCCGACTCGCCGCCTTCAGCTTCCTCTCCCGGGTCAGGTTTCGTTTCTGATATGGGAGCCGAGA
ATAAAATCGACGGCGATGTTGATTGGCATAAAAATGACCGTCAAAATCAACCGCCGTCTGTGTCACCGTCTATGCAGAATCACGATTCCAAATTGCTCAC
TTTGCCTACCATTTTAACCCTCGGTCGCGTAGCTGCCGTGCCGCTACTTGTTGCCACATTTTATGTGGATAGTTGGTGGGCAAGAACCGCTACAACAAGT
ATTTTTGTTGCCGCAGCAATTACTGATTGGCTTGACGGGTACCTTGCACGAAAGATGAAGTTAGGCACAGTTTTTGGTGCGTTTTTGGATCCGGTAGCTG
ATAAGCTTATGGTTGCTGCTGCCTTGATCTTATTATGTTCCCGACCTTTGGAGGTTGCAATGTTTAGAGAAGTACCGTGGCTATTCACTGTACCGGCGAT
TGCAATTATTGGACGGGAGATAACCATGTCTGCAGTTAGAGAATGGGCTGCTTCACAGAATACAAGACTTTTAGAGGCTGTTGCTGTAAATAACTTAGGG
AAGTGGAAAACTGCTACCCAGATGATTTCACTAACTATCCTCTTGGCTACCCGAGACAGCAGCCTTGGAGGACCAGGGATTTTAGTACCTTCAGGTGTCC
TTTTACTTTATATCTCAGCAGGTCTTTCTGTATGGTCTTTAGCTATATATATGAGTAAGATATGGAAAGTATTGCTGAAGTAG
AA sequence
>Potri.008G046700.2 pacid=42807905 polypeptide=Potri.008G046700.2.p locus=Potri.008G046700 ID=Potri.008G046700.2.v4.1 annot-version=v4.1
MPTLKLSMAVSLLHHKKLAHTITTTTSTANPTPFLTPHSLSTPLNSDKSLRALTPCAHLPSNKNNKNTPYYYHYNITSYNNNKSSKNFLGATFRGSLLFP
SRKSSSSTRFSRSDSPPSASSPGSGFVSDMGAENKIDGDVDWHKNDRQNQPPSVSPSMQNHDSKLLTLPTILTLGRVAAVPLLVATFYVDSWWARTATTS
IFVAAAITDWLDGYLARKMKLGTVFGAFLDPVADKLMVAAALILLCSRPLEVAMFREVPWLFTVPAIAIIGREITMSAVREWAASQNTRLLEAVAVNNLG
KWKTATQMISLTILLATRDSSLGGPGILVPSGVLLLYISAGLSVWSLAIYMSKIWKVLLK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G55030 PGPS2 phosphatidylglycerolphosphate ... Potri.008G046700
[exp]
0 1
AT5G16790 AtTHO7 Tho complex subunit 7/Mft1p (.... Potri.013G080200
[exp]
5.19 0.8397
AT4G15410 PUX5, ATB' GAMM... serine/threonine protein phosp... Potri.002G225800
[exp]
5.83 0.8059
AT2G13840 Polymerase/histidinol phosphat... Potri.001G206400
[exp]
6.48 0.8464
AT5G20070 ATNUDX19, ATNUD... ARABIDOPSIS THALIANA NUDIX HYD... Potri.006G154200
[exp]
8.12 0.8280
AT5G58760 DDB2 damaged DNA binding 2 (.1) Potri.001G251000
[exp]
11.04 0.8418
AT3G15040 Protein of unknown function, D... Potri.006G209500
[exp]
17.32 0.8020
AT4G38100 unknown protein Potri.005G147801
[exp]
17.74 0.8312
AT5G16800 Acyl-CoA N-acyltransferases (N... Potri.013G079900
[exp]
18.16 0.7928
AT4G03240 ATFH, FH frataxin homolog (.1) Potri.013G150400
[exp]
28.16 0.8130
AT4G31200 SWAP (Suppressor-of-White-APri... Potri.018G002000
[exp]
31.74 0.7834

Potri.008G046700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.