Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55040 318 / 5e-109 GSTL2 glutathione transferase lambda 2 (.1) AT5G02790 301 / 2e-103 GSTL3 Glutathione transferase L3, Glutathione S-transferase family protein (.1) AT5G02780 297 / 2e-101 GSTL1 glutathione transferase lambda 1 (.1.2) AT1G53680 60 / 2e-10 ATGSTU28 glutathione S-transferase TAU 28 (.1) AT1G78380 59 / 4e-10 GST8, ATGSTU19 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) AT1G75270 56 / 4e-09 DHAR2 dehydroascorbate reductase 2 (.1) AT1G78370 55 / 8e-09 ATGSTU20 glutathione S-transferase TAU 20 (.1) AT1G17180 52 / 7e-08 ATGSTU25 glutathione S-transferase TAU 25 (.1) AT1G78360 47 / 6e-06 ATGSTU21 glutathione S-transferase TAU 21 (.1) AT1G17170 45 / 2e-05 ATGSTU24 Arabidopsis thaliana Glutathione S-transferase \(class tau\) 24, glutathione S-transferase TAU 24 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G083500 [exp] 336 / 6e-117 AT5G02790 340 / 2e-119 Glutathione transferase L3, Glutathione S-transferase family protein (.1) Potri.006G133500 [exp] 329 / 4e-114 AT5G02790 325 / 1e-113 Glutathione transferase L3, Glutathione S-transferase family protein (.1) Potri.010G214800 [exp] 165 / 6e-51 AT5G02780 98 / 6e-26 glutathione transferase lambda 1 (.1.2) Potri.017G125100 [exp] 63 / 2e-11 AT5G16710 389 / 4e-138 dehydroascorbate reductase 1 (.1) Potri.001G436500 [exp] 60 / 2e-10 AT1G78380 303 / 2e-105 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Potri.011G140400 [exp] 58 / 9e-10 AT1G78380 308 / 9e-108 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Potri.001G436800 [exp] 55 / 1e-08 AT1G17180 308 / 2e-107 glutathione S-transferase TAU 25 (.1) Potri.011G140600 [exp] 54 / 3e-08 AT1G78380 252 / 2e-85 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Potri.011G112900 [exp] 53 / 4e-08 AT1G17180 271 / 1e-92 glutathione S-transferase TAU 25 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040347 [exp] 382 / 1e-133 AT3G55040 290 / 8e-98 glutathione transferase lambda 2 (.1) Lus10015049 [exp] 324 / 4e-112 AT5G02790 322 / 3e-112 Glutathione transferase L3, Glutathione S-transferase family protein (.1) Lus10003994 [exp] 303 / 1e-103 AT5G02790 324 / 5e-113 Glutathione transferase L3, Glutathione S-transferase family protein (.1) Lus10019895 [exp] 267 / 4e-85 AT5G12130 399 / 6e-135 PIGMENT DEFECTIVE 149, TELLURITE RESISTANCE C, integral membrane TerC family protein (.1) Lus10023441 [exp] 61 / 1e-10 AT1G75270 327 / 3e-115 dehydroascorbate reductase 2 (.1) Lus10009135 [exp] 59 / 1e-09 AT5G16710 372 / 5e-130 dehydroascorbate reductase 1 (.1) Lus10014022 [exp] 59 / 2e-09 AT5G12130 402 / 7e-137 PIGMENT DEFECTIVE 149, TELLURITE RESISTANCE C, integral membrane TerC family protein (.1) Lus10040320 [exp] 59 / 2e-09 AT1G75270 320 / 4e-108 dehydroascorbate reductase 2 (.1) Lus10028510 [exp] 57 / 9e-09 AT5G16710 352 / 2e-120 dehydroascorbate reductase 1 (.1) Lus10042469 [exp] 54 / 2e-08 AT1G78380 284 / 5e-98 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0497 [poplar] [flax] GST_C PF13410 [poplar] [flax] GST_C_2 Glutathione S-transferase, C-terminal domain CL0172 [poplar] [flax] Thioredoxin PF13417 [poplar] [flax] GST_N_3 Glutathione S-transferase, N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.008G046800.9 pacid=42807435 polypeptide=Potri.008G046800.9.p locus=Potri.008G046800 ID=Potri.008G046800.9.v4.1 annot-version=v4.1 ATGGCCACATTACTGCCCATGAACTATTCCAATGGTTCAGCACCACTGACGCCTTCAAAACATCTTTCTCTTCGTTTCTCTGTCCATCTGTCCTCCAAGA AAACAAGAAGATGGCTAGACGCTGATGCCGTAAAACTACCACGCTATCATTCGCTTCAACTTCAACCACTAAGCAAATCCAAAACTGGTCCCATATCAGC AACGATGGCTACTGGAAGCGGGAAAGAAGTTCTTCCACCAGTTCTTACTTCTAATTCAGAACCACCTCCAGTTTTTGATGGAACAACAAGGTTGTATATA TCGTACACATGTCCCTATGCACAGCGTGTGTGGATTACCCGGAATTGCAAGGGACTTCAGGACAAGATAAAATTGGTTCCTATTGATTTACAAGACAGGC CTGCTTGGTACAAGGAGAAAGTGTATCCTCCTAACAAGGTGCCTTCACTGGAACACAATAACGAAGTGAAAGGAGAGTCTCTTGATTTGATTAAATATAT TGACAGTCACTTCGATGGGCCGTCACTTTTTCCTGATGATCCTGCAAAGAAGGAATTTGCAGAGGATTTGTTTTCCTACACTGGTTCATTCAGCAAAGCC AATAATTCCACATTCAAAGGAGAAGCAGATGAGGCTGGTGCTGCATTTGATTATATTGAAACCGCTCTTTCCAAATTTGACGACGGGCCCTTTTTCCTTG GGCAGTTCAGTCTGGTGGATATAGCTTATGCTCCATTTATCGAAAGATTTCAGCCTGCCTTGCTGGAATTTAAGAAGTATGACATCACTGCGGGAAGGCC TAAACTGGCTGCTTGGATTGAGGAGATGAACAAAATAGAGGCTTACAACCAAACCAGGCGCGAGCCAAAGCAGCATGTTGAAACCTACAAGAAACGCTTT GCGGCTCATCTTTGA
AA sequence Show only first row Show all	>Potri.008G046800.9 pacid=42807435 polypeptide=Potri.008G046800.9.p locus=Potri.008G046800 ID=Potri.008G046800.9.v4.1 annot-version=v4.1 MATLLPMNYSNGSAPLTPSKHLSLRFSVHLSSKKTRRWLDADAVKLPRYHSLQLQPLSKSKTGPISATMATGSGKEVLPPVLTSNSEPPPVFDGTTRLYI SYTCPYAQRVWITRNCKGLQDKIKLVPIDLQDRPAWYKEKVYPPNKVPSLEHNNEVKGESLDLIKYIDSHFDGPSLFPDDPAKKEFAEDLFSYTGSFSKA NNSTFKGEADEAGAAFDYIETALSKFDDGPFFLGQFSLVDIAYAPFIERFQPALLEFKKYDITAGRPKLAAWIEEMNKIEAYNQTRREPKQHVETYKKRF AAHL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G55040		GSTL2	glutathione transferase lambda...		Potri.008G046800 [exp]	0	1
AT4G01995			unknown protein		Potri.002G194500 [exp]	2.00	0.9362
AT4G04850		ATKEA3, KEA3	K+ efflux antiporter 3, K+ eff...		Potri.009G080800 [exp]	8.00	0.9389
AT3G12685			Acid phosphatase/vanadium-depe...		Potri.010G176100 [exp]	11.22	0.9214
AT3G26085			CAAX amino terminal protease f...		Potri.008G181400 [exp]	11.74	0.8895
AT5G46110		TPT, APE2	triose-phosphate ⁄ phosp...		Potri.011G057800 [exp]	12.96	0.9255	APE2.1
AT4G30950		FADC, SFD4, FAD...	STEAROYL DESATURASE DEFICIENCY...		Potri.006G185400 [exp]	15.65	0.9202
AT1G25290		ATRBL10	RHOMBOID-like protein 10 (.1.2...		Potri.003G019500 [exp]	16.18	0.8676
AT3G17930			unknown protein		Potri.015G036500 [exp]	20.61	0.9243
AT2G46910			Plastid-lipid associated prote...		Potri.002G183700 [exp]	21.07	0.8941
AT2G30170			Protein phosphatase 2C family ...		Potri.001G282500 [exp]	21.81	0.9092

Compare expression of checked genes

Potri.008G046800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.